Rh1CG289800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0029689
Physical Location & Seq
Reverse (-)
56255586 .. 56265315
9730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG289800.1

Sequence Viewer

Length: 588 bp
ATGATCAGAGACCCCTTCGGTTTGACGCCGGCGCCAGCGGACCCAGCTGTAGTATGTGCCATATACATGGCAGTGGCGCGTGCTCTCACCCTCACATCTACCCCGGCGGCGGCGCCACCTCCACCTTTGAGGCTGGGGTTTGGTACCGTTGGTGAACGGGTCCAGGTTTTCACCAATCACTTCAGCGTGGAGGTTGAGGAAGGTCATCTATATCACTATGATACTTCCAGTATACGATGGCTTGAAGAGTCTCTACACCACTCTGCCATATCCCTTCTCTTTGAAAGAGTTTGTGGTCAAGCTGTGGGGATCTCCATTCCAATGGTGGCCAATGATATTCATTACCACCAAAAATTAATGAACAATCAATTTGGAATAAAAGTGAGCAAAGACATGGAACTTGTGGATGCTAGGGTATTACCACCTCCAATGGTAATTACTGCCCGTTTATGTTTCAGCAGTTCAAACAACACTGATCTTTCTATTTTACCGAGTGATTATGCTCATTGTCACAGCTTAAATACCATGACAATGGTCTTGAAACAAAGGATATACTCCCCGGATGGGTGCGTGGAACATGGACAATAA

Protein Analysis

195

Amino Acids

21.47

Weight (kDa)

6.02

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL2 PF16488 114 - 145 2.7e-09 Argonaute linker 2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029689)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362631
rosa_samantha Rh1CG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 3 cut(s) 31, 112, 143
AccI GTMKAC 1 cut(s) 232
AccII CGCG 1 cut(s) 79
AciI CCGC 3 cut(s) 38, 107, 110
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 166
AcyI GRCGYC 3 cut(s) 26, 32, 113
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 109, 564
AgsI TTSAA 4 cut(s) 245, 284, 465, 541
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 47, 302, 516
AluI AGCT 3 cut(s) 47, 302, 516
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 3, 255
AlwI GGATC 1 cut(s) 317
AoxI GGCC 1 cut(s) 327
AseI ATTAAT 1 cut(s) 356
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 3 cut(s) 34, 79, 115
AspS9I GGNCC 2 cut(s) 40, 160
AsuC2I CCSGG 2 cut(s) 104, 560
AsuHPI GGTGA 3 cut(s) 79, 163, 164
AvaII GGWCC 2 cut(s) 40, 160
BalI TGGCCA 1 cut(s) 329
BanI GGYRCC 3 cut(s) 31, 112, 143
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 2 cut(s) 231, 557
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 104, 560
BcoDI GTCTC 2 cut(s) 3, 255
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 2 cut(s) 35, 116
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 3 cut(s) 104, 164, 560
Bme18I GGWCC 2 cut(s) 40, 160
BmgT120I GGNCC 2 cut(s) 40, 160
BmiI GGNNCC 5 cut(s) 33, 42, 114, 145, 161
BmrFI CCNGG 3 cut(s) 104, 164, 560
BmsI GCATC 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 104, 560
BsaHI GRCGYC 3 cut(s) 26, 32, 113
BsaI GGTCTC 1 cut(s) 3
BsaJI CCNNGG 2 cut(s) 102, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 564
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 102, 558
BseGI GGATG 2 cut(s) 412, 568
BseLI CCNNNNNNNGG 2 cut(s) 109, 564
BseNI ACTGG 1 cut(s) 228
BseYI CCCAGC 2 cut(s) 43, 133
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 3 cut(s) 31, 112, 143
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 3 cut(s) 29, 104, 560
BslI CCNNNNNNNGG 2 cut(s) 109, 564
BsmAI GTCTC 2 cut(s) 3, 255
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 3
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 3, 309, 475
BspACI CCGC 3 cut(s) 38, 107, 110
BspANI GGCC 1 cut(s) 329
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 5 cut(s) 33, 42, 114, 145, 161
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 3 cut(s) 31, 112, 143
BspTNI GGTCTC 1 cut(s) 3
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 102, 558
BssMI GATC 3 cut(s) 3, 309, 475
BssNAI GTATAC 1 cut(s) 233
BssNI GRCGYC 3 cut(s) 26, 32, 113
Bst1107I GTATAC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 3 cut(s) 26, 32, 113
BstC8I GCNNGC 3 cut(s) 30, 36, 81
BstF5I GGATG 2 cut(s) 412, 568
BstFNI CGCG 1 cut(s) 79
BstH2I RGCGCY 2 cut(s) 35, 116
BstHHI GCGC 3 cut(s) 34, 79, 115
BstKTI GATC 3 cut(s) 6, 312, 478
BstMAI GTCTC 2 cut(s) 3, 255
BstMBI GATC 3 cut(s) 3, 309, 475
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 102, 162, 558
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 309
BstXI CCANNNNNNTGG 3 cut(s) 67, 322, 532
BstYI RGATCY 1 cut(s) 309
BstZ17I GTATAC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 412, 568
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 471
Cac8I GCNNGC 3 cut(s) 30, 36, 81
CfoI GCGC 3 cut(s) 34, 79, 115
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 40, 160
CseI GACGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 144
CviAII CATG 4 cut(s) 67, 394, 526, 578
CviJI RGCY 6 cut(s) 47, 133, 241, 302, 329, 516
CviKI_1 RGCY 6 cut(s) 47, 133, 241, 302, 329, 516
CviQI GTAC 1 cut(s) 144
DinI GGCGCC 2 cut(s) 33, 114
DpnI GATC 3 cut(s) 5, 311, 477
DpnII GATC 3 cut(s) 3, 309, 475
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 3
Eco47I GGWCC 2 cut(s) 40, 160
Eco57I CTGAAG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 162
EgeI GGCGCC 2 cut(s) 33, 114
EheI GGCGCC 2 cut(s) 33, 114
FaeI CATG 4 cut(s) 70, 397, 529, 581
FatI CATG 4 cut(s) 66, 393, 525, 577
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 108, 111
FokI GGATG 2 cut(s) 419, 575
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 1 cut(s) 411
GlaI GCGC 3 cut(s) 33, 78, 114
GluI GCNGC 2 cut(s) 108, 111
GsaI CCCAGC 2 cut(s) 47, 137
HaeII RGCGCY 2 cut(s) 35, 116
HaeIII GGCC 1 cut(s) 329
HapII CCGG 3 cut(s) 29, 104, 560
HgaI GACGC 1 cut(s) 34
HhaI GCGC 3 cut(s) 34, 79, 115
Hin1I GRCGYC 3 cut(s) 26, 32, 113
Hin1II CATG 4 cut(s) 70, 397, 529, 581
Hin6I GCGC 3 cut(s) 32, 77, 113
HinP1I GCGC 3 cut(s) 32, 77, 113
HinfI GANTC 1 cut(s) 248
HpaII CCGG 3 cut(s) 29, 104, 560
HphI GGTGA 3 cut(s) 79, 163, 164
Hpy166II GTNNAC 2 cut(s) 155, 233
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 2 cut(s) 155, 233
HpyAV CCTTC 3 cut(s) 25, 194, 284
HpyCH4III ACNGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92I GRCGYC 3 cut(s) 26, 32, 113
Hsp92II CATG 4 cut(s) 70, 397, 529, 581
HspAI GCGC 3 cut(s) 32, 77, 113
KasI GGCGCC 2 cut(s) 31, 112
KpnI GGTACC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 309, 475
LpnPI CCDG 9 cut(s) 42, 48, 57, 117, 119, 149, 176, 241, 573
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 5, 311, 477
MboI GATC 3 cut(s) 3, 309, 475
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 3 cut(s) 353, 368, 435
MluNI TGGCCA 1 cut(s) 329
Mly113I GGCGCC 2 cut(s) 32, 113
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 6 cut(s) 101, 123, 129, 184, 190, 435
Mox20I TGGCCA 1 cut(s) 329
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 356, 518
MslI CAYNNNNRTG 4 cut(s) 65, 71, 320, 530
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 38, 47
MspI CCGG 3 cut(s) 29, 104, 560
MspR9I CCNGG 3 cut(s) 104, 164, 560
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 2 cut(s) 32, 113
NciI CCSGG 2 cut(s) 104, 560
NdeII GATC 3 cut(s) 3, 309, 475
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 70, 397, 529, 581
NlaIV GGNNCC 5 cut(s) 33, 42, 114, 145, 161
NmuCI GTSAC 1 cut(s) 509
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 2 cut(s) 35, 116
PpsI GAGTC 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 2 cut(s) 43, 133
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 5 cut(s) 33, 42, 114, 145, 161
PspPI GGNCC 2 cut(s) 40, 160
PsuI RGATCY 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 4 cut(s) 65, 71, 320, 530
SaqAI TTAA 2 cut(s) 356, 518
SatI GCNGC 2 cut(s) 108, 111
Sau3AI GATC 3 cut(s) 3, 309, 475
Sau96I GGNCC 2 cut(s) 40, 160
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 104, 164, 560
SduI GDGCHC 1 cut(s) 85
SetI ASST 9 cut(s) 49, 121, 127, 168, 195, 205, 304, 427, 518
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 2 cut(s) 33, 114
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 40, 160
SmiMI CAYNNNNRTG 4 cut(s) 65, 71, 320, 530
Sse9I AATT 3 cut(s) 353, 368, 435
SsiI CCGC 3 cut(s) 38, 107, 110
SspDI GGCGCC 2 cut(s) 31, 112
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 3 cut(s) 102, 162, 558
TaaI ACNGT 1 cut(s) 148
TasI AATT 3 cut(s) 353, 368, 435
TauI GCSGC 2 cut(s) 110, 113
Tru1I TTAA 2 cut(s) 356, 518
Tru9I TTAA 2 cut(s) 356, 518
TscAI CASTG 2 cut(s) 78, 478
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 2 cut(s) 329, 374
TspRI CASTG 2 cut(s) 78, 478
VpaK11BI GGWCC 2 cut(s) 40, 160
VspI ATTAAT 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.