Rh1DG028600

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0025511
Physical Location & Seq
Forward (+)
4322041 .. 4328274
6234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG028600.1

Sequence Viewer

Length: 480 bp
ATGGGTTCTTCCGGCACTTGTGGGGTTCCCAAACTTATCTGTGTTGTGTTCGTGATATTGTTTCTTGGCTCCTGTGCTTCTTCATCATCTTCCTTGCACCCTTTGGTTGTCCAGTCACAGATTGAACACCTTAACCACACGGCAATATCAGAGTTTAGGTTGCTGAACAGAAAATTTCTTGGCAACTGTCGGAATCCGAGCCCATATCTGCAAATTAGTGTTAACCCGAGTCCTGGTGGCCTTGGAGATGATGAGTTTGTGACTGTCAATGTTAGTGGCATCTTGAACCCTTCTAAAAATGATTGGGTGGCCATGATCTCACCTGCTAATTCTGATGTCTCAACTTGTCCTTTGAATACGTTTTACTATGTACAGACCGGTGATTTTAGTAAACTTCCTCTTCTCTGCCATTATCCTGTTAAGTTTGTGAATGCAAACACAAGAAAAGTTGACGACAGCTTCCACATTACAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

7.64

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 83 - 147 3.8e-15 Fn3-like domain from Purple Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025511)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8223780.1_g000001 Rmu_sc0001522.1_g000014
rosa_samantha Rh1DG028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 233
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 3 cut(s) 125, 286, 355
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 459
AluI AGCT 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 2 cut(s) 238, 309
ApoI RAATTY 1 cut(s) 173
AsiGI ACCGGT 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 312, 392
AvaI CYCGRG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 27, 70
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 112
BshFI GGCC 2 cut(s) 240, 311
BshTI ACCGGT 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 12, 378
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 2 cut(s) 240, 311
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 315
BspANI GGCC 2 cut(s) 240, 311
BspLI GGNNCC 2 cut(s) 27, 70
BspMI ACCTGC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 188, 265
Bst6I CTCTTC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 370
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 240, 311
BveI ACCTGC 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 377
Csp6I GTAC 1 cut(s) 371
CspAI ACCGGT 1 cut(s) 377
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 69, 201, 240, 311, 459
CviKI_1 RGCY 5 cut(s) 69, 201, 240, 311, 459
CviQI GTAC 1 cut(s) 371
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 205, 314, 369, 478
FatI CATG 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 203
HaeIII GGCC 2 cut(s) 240, 311
HapII CCGG 2 cut(s) 12, 378
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 2 cut(s) 223, 451
HindII GTYRAC 2 cut(s) 223, 451
HinfI GANTC 2 cut(s) 193, 229
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 12, 378
HphI GGTGA 2 cut(s) 312, 392
Hpy166II GTNNAC 3 cut(s) 223, 392, 451
Hpy188I TCNGA 4 cut(s) 151, 192, 198, 334
Hpy188III TCNNGA 2 cut(s) 52, 283
Hpy8I GTNNAC 3 cut(s) 223, 392, 451
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 188, 265
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 97, 211, 434
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 8 cut(s) 25, 85, 125, 219, 246, 336, 391, 429
LweI GCATC 1 cut(s) 288
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 114, 259
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 3 cut(s) 72, 81, 392
MhlI GDGCHC 1 cut(s) 203
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 3 cut(s) 173, 213, 328
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 3 cut(s) 132, 222, 420
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 2 cut(s) 12, 378
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 1 cut(s) 234
NdeII GATC 1 cut(s) 315
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 27, 70
NmuCI GTSAC 2 cut(s) 114, 259
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 377
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 27, 70
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 132, 222, 420
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 132, 161, 325, 362, 461
SfaNI GCATC 1 cut(s) 288
Sse9I AATT 3 cut(s) 173, 213, 328
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 188, 265
TaiI ACGT 1 cut(s) 362
TasI AATT 3 cut(s) 173, 213, 328
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 3 cut(s) 132, 222, 420
Tru9I TTAA 3 cut(s) 132, 222, 420
TseFI GTSAC 2 cut(s) 114, 259
Tsp45I GTSAC 2 cut(s) 114, 259
TspDTI ATGAA 1 cut(s) 72
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.