Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0029684

Physical Location & Seq

Genomic Coordinates Forward (+)

12517521 .. 12517772

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAACCAGTTGCAGGCGGAGGATCCGAGCGACGGAGAGAGTCGAGGTCAGTCGTCGCAGTCCGGGAAAGGAGTCGTCTGGTGGTGGAGCTGTTCAGCGTGTTCACAGCGATAGGGGACGACCGGTGCACGTTAGAGGACTGCCGATGCAAGTCGGGTTGCTGGAATCTGGACTGCAGATTCTGGTATGGTGGTGTGCAGGTGGAGACTGCGGTCTGGTCTGTGCTTAGTCAGAAAGGAATCAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

8.37

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324651
rosa_samantha	Rh1DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	2 cut(s)	18, 212
AclWI	GGATC	2 cut(s)	18, 31
AfiI	CCNNNNNNNGG	2 cut(s)	14, 33
AgeI	ACCGGT	1 cut(s)	123
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	18, 31
AlwNI	CAGNNNCTG	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	127
AsiGI	ACCGGT	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	6, 25
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	137
BoxI	GACNNNNGTC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 33
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	14, 33
BseNI	ACTGG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	64, 124
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	14, 33
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	18, 212
BspLI	GGNNCC	2 cut(s)	6, 25
BspMAI	CTGCAG	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	18, 31
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	123
BssMI	GATC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	123
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	33
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	131
HapII	CCGG	2 cut(s)	64, 124
HinfI	GANTC	5 cut(s)	41, 73, 166, 180, 240
HpaII	CCGG	2 cut(s)	64, 124
Hpy166II	GTNNAC	2 cut(s)	105, 129
Hpy188I	TCNGA	2 cut(s)	28, 234
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	105, 129
Hpy99I	CGWCG	2 cut(s)	36, 59
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	14, 129, 150, 177, 199
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	21, 65, 77, 137, 148, 155, 169, 185, 202
LweI	GCATC	1 cut(s)	137
MaeII	ACGT	1 cut(s)	131
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	50, 82
MnlI	CCTC	3 cut(s)	14, 39, 130
MspI	CCGG	2 cut(s)	64, 124
MspR9I	CCNGG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	6, 25
PaqCI	CACCTGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	166, 180, 240
PfoI	TCCNGGA	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	123
PleI	GAGTC	2 cut(s)	49, 81
PpsI	GAGTC	2 cut(s)	49, 81
PshAI	GACNNNNGTC	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	6, 25
PstI	CTGCAG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	50, 82
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	50, 93, 134, 204, 249
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	175
SsiI	CCGC	2 cut(s)	18, 212
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	166, 180, 240
TspGWI	ACGGA	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.