Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0034264

Physical Location & Seq

Genomic Coordinates Forward (+)

13821262 .. 13822749

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCTGGAAGAGTCTCCGTCAGTAGCATTGAAGCGTGAGAAGCTGAAAAAGAGCATCAACAAGCTTAAAGAATCCAAGGAGGTTGTGGGTAAGATTATGGATGGCATTATCACGTATGCCTCCCATTCTTTTGAGGAGTGGCCAAAGCCATTTCATCGTTCACAACAAAAGCCGGAGTTGCAAGGCAAGCATCTTCTTACTCGATCTGACCATTGCAACCGCAGCAGGACACTTATGTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

81

Amino Acids

9.41

Weight (kDa)

9.72

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034264)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG070500 Rh1DG075200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AciI	CCGC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	2 cut(s)	43, 64
AluI	AGCT	2 cut(s)	43, 64
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
BmsI	GCATC	2 cut(s)	63, 199
BsaAI	YACGTR	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 178, 187, 222
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	188
CviJI	RGCY	5 cut(s)	43, 64, 142, 148, 172
CviKI_1	RGCY	5 cut(s)	43, 64, 142, 148, 172
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	98, 117, 236
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	11, 71
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	161, 240
Hpy188I	TCNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	161, 240
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	181, 216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 178, 187, 222
HpySE526I	ACGT	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	203
LpnPI	CCDG	2 cut(s)	186, 211
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	63, 199
MaeII	ACGT	1 cut(s)	113
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	20, 185
MlsI	TGGCCA	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	3 cut(s)	73, 127, 130
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	2 cut(s)	66, 244
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	40, 178, 187, 222
NdeII	GATC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	66, 244
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	20
SetI	ASST	4 cut(s)	45, 66, 84, 116
SfaNI	GCATC	2 cut(s)	63, 199
SsiI	CCGC	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	66, 244
Tru9I	TTAA	2 cut(s)	66, 244
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	6
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.