Rh1DG098800

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0033989
Physical Location & Seq
Reverse (-)
18620869 .. 18621414
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG098800.1

Sequence Viewer

Length: 546 bp
ATGCTTCCAGATGTCAGGATTCAGGGCTTGAATGTCTATTGTGTGTATGCAACTGATGACACTGACCATAATGAACTTATTATCACCGATGATCATGATGCTTCACCGAAGGATATGATGATACAGGTTTACAATATGAGCACGGGTGTGAAGTGGATCTATGCTCCGTTGTTCTTCGGCTATCCGGATGAAGGAAAAGACATGATATGGTTGAGCTATTGGAAGTTAGACAATCAACTGGGAAATGGTGATGAAGCAACTGTTTCTATATTTGCCAATTCTAGGTTTACATTGAAAGAATGTGGCATCCAAATTGTGTACGAGCCAGAAAAGGATATGAGTGGCCAAGACAACAATAACAGTATCAACTCTAATATTCCTTCAAAACATGGAGGTATTTGTGGATATTGGACAGACTTTGAGGTGTCGCCAGGCACATATATCCTCATGGATGGACCTGCGCCACCTGAAGGATATACTCCTAGAAGCAAAATGTGGACATGGTTCCGTCCTATGAGTGAGATAAAAGTACACTCAGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

4.53

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033989)

Species Orthologous Gene IDs
rosa_samantha Rh1BG076200 Rh1DG098800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccIII TCCGGA 1 cut(s) 184
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 2 cut(s) 320, 531
AfiI CCNNNNNNNGG 3 cut(s) 191, 282, 470
AgsI TTSAA 3 cut(s) 31, 295, 384
AjnI CCWGG 1 cut(s) 430
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 143
AlwI GGATC 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 343
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 76, 96, 260
AvaII GGWCC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 432
BclI TGATCA 1 cut(s) 91
BfaI CTAG 2 cut(s) 282, 483
BfuAI ACCTGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 88, 315
BmuI ACTGGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 282, 470
Bse1I ACTGG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 3 cut(s) 193, 306, 457
BseLI CCNNNNNNNGG 3 cut(s) 191, 282, 470
BseNI ACTGG 1 cut(s) 243
BshFI GGCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 191, 282, 470
BsnI GGCC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 91, 156
BspANI GGCC 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 243
BssMI GATC 2 cut(s) 91, 156
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 262, 362
BstDEI CTNAG 1 cut(s) 535
BstF5I GGATG 3 cut(s) 193, 306, 457
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 94, 159
BstMBI GATC 2 cut(s) 91, 156
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 3 cut(s) 193, 306, 457
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 466
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 319, 530
CviAII CATG 5 cut(s) 95, 202, 389, 448, 501
CviJI RGCY 5 cut(s) 27, 180, 216, 325, 345
CviKI_1 RGCY 5 cut(s) 27, 180, 216, 325, 345
CviQI GTAC 2 cut(s) 319, 530
DdeI CTNAG 1 cut(s) 535
DpnI GATC 2 cut(s) 93, 158
DpnII GATC 2 cut(s) 91, 156
EaeI YGGCCR 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 430
FaeI CATG 5 cut(s) 98, 205, 392, 451, 504
FatI CATG 5 cut(s) 94, 201, 388, 447, 500
FbaI TGATCA 1 cut(s) 91
FokI GGATG 3 cut(s) 200, 293, 464
FspBI CTAG 2 cut(s) 282, 483
GlaI GCGC 1 cut(s) 462
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 463
Hin1II CATG 5 cut(s) 98, 205, 392, 451, 504
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 76, 96, 260
Hpy166II GTNNAC 5 cut(s) 130, 288, 319, 498, 532
Hpy188III TCNNGA 4 cut(s) 8, 16, 95, 185
Hpy8I GTNNAC 5 cut(s) 130, 288, 319, 498, 532
HpyAV CCTTC 4 cut(s) 103, 185, 390, 464
HpyCH4III ACNGT 2 cut(s) 262, 362
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 535
Hsp92II CATG 5 cut(s) 98, 205, 392, 451, 504
HspAI GCGC 1 cut(s) 461
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 91, 156
LmnI GCTCC 1 cut(s) 169
LweI GCATC 2 cut(s) 88, 315
MaeI CTAG 2 cut(s) 282, 483
MalI GATC 2 cut(s) 93, 158
MboI GATC 2 cut(s) 91, 156
MboII GAAGA 1 cut(s) 166
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 277, 312
MluNI TGGCCA 1 cut(s) 345
MnlI CCTC 3 cut(s) 386, 415, 455
Mox20I TGGCCA 1 cut(s) 345
MroI TCCGGA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
NdeII GATC 2 cut(s) 91, 156
NlaIII CATG 5 cut(s) 98, 205, 392, 451, 504
NlaIV GGNNCC 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 146
PagI TCATGA 1 cut(s) 94
PfeI GAWTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 320, 531
RsaNI GTAC 2 cut(s) 319, 530
RseI CAYNNNNRTG 1 cut(s) 146
Sau3AI GATC 2 cut(s) 91, 156
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 143
SetI ASST 8 cut(s) 129, 218, 287, 397, 426, 460, 469, 541
SfaNI GCATC 2 cut(s) 88, 315
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 2 cut(s) 277, 312
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 282, 483
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 262, 362
TasI AATT 2 cut(s) 277, 312
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 1 cut(s) 19
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 87, 204, 267
TspGWI ACGGA 2 cut(s) 156, 497
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 455
XspI CTAG 2 cut(s) 282, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.