Rh1DG220000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034018
Physical Location & Seq
Reverse (-)
42867400 .. 42868936
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG220000.1

Sequence Viewer

Length: 582 bp
ATGAACGCCGTTACACGGAGGCCAAATTTGAGATACAATGGCACGATGAATCATGTTTTGAACTCTACAAATACGAGTCGAATGACCCATTCATCAAAAGGTGCGGAGTTCGATTCGTTTTTGCCAACAAGGAGGAAGTTTGGGGAACCAATGGTAGAAGTTGATAATTCTGAGAGGCGCCTTGAGGGGTGCTCGGTTGAACCCAGTGGTAGTAGCATCACAAGTGACACTTCCAATGTCGATGAGCAATACCTTAAATTATTATCAAAAGTTTTTAAAGGCGCAAACAGACCACCGAGTTACATCAAAATTGAGGACAGTGATTCATCTGAGGGTAGTGACATCACAGGTGACACCTCCGATGAGGATGAGCAATACCTTAAATCATCACAAGCTTTTAAAGGCGCAAACAGAGCACCGAGTTATTTCAAAATTCAGGACAATGATTCATCTGGGAAGAGGAAAACCCTGGAAAGTTGGACGCAAGAAGTCAGAGTTACATCGGGTCTGAGCCAAGGGCCTCTGGATGATGAGTCTATTACGTATGCACTCCTCAAAATATCGGAGGCTGCATGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.43

Weight (kDa)

5.19

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034018)

Species Orthologous Gene IDs
rosa_samantha Rh1BG191400 Rh1DG220000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 575
AcsI RAATTY 2 cut(s) 25, 432
AcyI GRCGYC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 3 cut(s) 61, 200, 430
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw21I GWGCWC 2 cut(s) 194, 418
AoxI GGCC 3 cut(s) 20, 518, 575
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 25, 432
AspLEI GCGC 3 cut(s) 180, 284, 407
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 362
BanI GGYRCC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 194, 418
BbvI GCAGC 1 cut(s) 556
BceAI ACGGC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 2 cut(s) 147, 179
BmrFI CCNGG 1 cut(s) 470
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 468, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 468, 514
BseGI GGATG 2 cut(s) 373, 532
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 162, 321, 500
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 556
BshFI GGCC 3 cut(s) 22, 520, 577
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 194, 418
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 3 cut(s) 22, 520, 577
Bsp1286I GDGCHC 2 cut(s) 194, 418
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 22, 520, 577
BspCNI CTCAG 3 cut(s) 163, 322, 501
BspLI GGNNCC 2 cut(s) 147, 179
BspT107I GGYRCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 468, 514
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 543
BstDEI CTNAG 3 cut(s) 171, 330, 509
BstF5I GGATG 2 cut(s) 373, 532
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 3 cut(s) 180, 284, 407
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSNI TACGTA 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 556
BsuRI GGCC 3 cut(s) 22, 520, 577
BtsCI GGATG 2 cut(s) 373, 532
BtsIMutI CAGTG 2 cut(s) 211, 325
CfoI GCGC 3 cut(s) 180, 284, 407
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 1 cut(s) 490
CviAII CATG 2 cut(s) 53, 573
CviJI RGCY 6 cut(s) 22, 395, 513, 520, 569, 577
CviKI_1 RGCY 6 cut(s) 22, 395, 513, 520, 569, 577
DdeI CTNAG 3 cut(s) 171, 330, 509
DinI GGCGCC 1 cut(s) 179
DraI TTTAAA 2 cut(s) 277, 400
EaeI YGGCCR 1 cut(s) 575
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco105I TACGTA 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 514
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 2 cut(s) 56, 576
FaiI YATR 3 cut(s) 54, 546, 574
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FatI CATG 2 cut(s) 52, 572
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 2 cut(s) 380, 539
Fsp4HI GCNGC 1 cut(s) 570
GlaI GCGC 3 cut(s) 179, 283, 406
GluI GCNGC 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 3 cut(s) 22, 520, 577
HgaI GACGC 1 cut(s) 490
HhaI GCGC 3 cut(s) 180, 284, 407
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 56, 576
Hin6I GCGC 3 cut(s) 178, 282, 405
HinP1I GCGC 3 cut(s) 178, 282, 405
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 6 cut(s) 49, 76, 113, 323, 446, 533
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 6 cut(s) 172, 331, 361, 494, 510, 565
Hpy188III TCNNGA 2 cut(s) 437, 524
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 2 cut(s) 548, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 3 cut(s) 171, 330, 509
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 56, 576
HspAI GCGC 3 cut(s) 178, 282, 405
KasI GGCGCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 217, 333, 422, 438, 455, 482, 509
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 225
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 6 cut(s) 10, 224, 299, 338, 350, 496
MboII GAAGA 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 194, 418
MluCI AATT 5 cut(s) 25, 166, 257, 309, 432
Mly113I GGCGCC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 85, 542
MmeI TCCRAC 1 cut(s) 458
MseI TTAA 4 cut(s) 255, 276, 381, 399
MslI CAYNNNNRTG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 413
NarI GGCGCC 1 cut(s) 178
NlaIII CATG 2 cut(s) 56, 576
NlaIV GGNNCC 2 cut(s) 147, 179
NmuCI GTSAC 3 cut(s) 224, 338, 350
PfeI GAWTC 4 cut(s) 49, 113, 323, 446
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 2 cut(s) 84, 541
PluTI GGCGCC 1 cut(s) 181
PpsI GAGTC 2 cut(s) 84, 541
Ppu21I YACGTR 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 147, 179
PspPI GGNCC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 577
SaqAI TTAA 4 cut(s) 255, 276, 381, 399
SatI GCNGC 1 cut(s) 570
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 85, 542
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 194, 418
SetI ASST 7 cut(s) 103, 255, 352, 359, 381, 397, 545
SfaNI GCATC 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SnaBI TACGTA 1 cut(s) 543
Sse9I AATT 5 cut(s) 25, 166, 257, 309, 432
SsiI CCGC 1 cut(s) 104
SspDI GGCGCC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 79, 111, 240
TasI AATT 5 cut(s) 25, 166, 257, 309, 432
TfiI GAWTC 4 cut(s) 49, 113, 323, 446
Tru1I TTAA 4 cut(s) 255, 276, 381, 399
Tru9I TTAA 4 cut(s) 255, 276, 381, 399
TscAI CASTG 2 cut(s) 211, 325
TseFI GTSAC 3 cut(s) 224, 338, 350
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 3 cut(s) 224, 338, 350
TspDTI ATGAA 5 cut(s) 17, 62, 81, 315, 438
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 211, 325
XapI RAATTY 2 cut(s) 25, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.