Rh1DG237200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034026
Physical Location & Seq
Reverse (-)
45047860 .. 45055033
7174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG237200.1

Sequence Viewer

Length: 393 bp
ATGCAAAGAATGAGCCATGAGATGCAATATATTGAATTCCTTGCAAAAATGAATTTTTCTCCTGATAGCAAATGGACAAGAATTCAGCAAGTGGGTCGTGGGTCTTCTGGATCTGCCTTCGAAGGATGTTTTGAGATGCACATGAATCCAATCAGAAATAAAGTTCAAACTAAATTGAACATAAAGCAACTCAATCATGTTCATTCTAAATTAAATATACCTTTGTTGCTAGTTGCTGCGCTCATCCATTCCACCACACTCCAGGACACAGATATTCATGGAAATGACATTTATGAGCATCTTGGAGCATCTTTTGGGTCCAAAAGTGAAAGATTACACTGGGCGAAGAACTTTAATGTTATTTGCCGGCCGGTGACTCAAATTTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.95

Weight (kDa)

9.03

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034026)

Species Orthologous Gene IDs
rosa_samantha Rh1BG210500 Rh1DG237200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 4 cut(s) 35, 52, 81, 381
AgsI TTSAA 3 cut(s) 35, 167, 178
AjnI CCWGG 1 cut(s) 261
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 4 cut(s) 35, 52, 81, 381
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 4 cut(s) 12, 126, 307, 317
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 120
Bse118I RCCGGY 2 cut(s) 366, 370
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 131, 243
BseNI ACTGG 1 cut(s) 344
BseX3I CGGCCG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 371
BsiSI CCGG 2 cut(s) 367, 371
BsnI GGCC 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 110
BspANI GGCC 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 120
BsrFI RCCGGY 2 cut(s) 366, 370
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 2 cut(s) 366, 370
BssMI GATC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 368
BstF5I GGATG 2 cut(s) 131, 243
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMCI CGRYCG 1 cut(s) 371
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BstZI CGGCCG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 131, 243
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 2 cut(s) 366, 370
Cfr13I GGNCC 1 cut(s) 318
CviAII CATG 4 cut(s) 17, 142, 197, 278
CviJI RGCY 2 cut(s) 15, 370
CviKI_1 RGCY 2 cut(s) 15, 370
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 368
EagI CGGCCG 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 318
Eco52I CGGCCG 1 cut(s) 368
EcoRI GAATTC 2 cut(s) 35, 81
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 4 cut(s) 20, 145, 200, 281
FaiI YATR 8 cut(s) 18, 30, 143, 182, 198, 218, 279, 294
FatI CATG 4 cut(s) 16, 141, 196, 277
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 2 cut(s) 138, 230
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 370
HapII CCGG 2 cut(s) 367, 371
HhaI GCGC 1 cut(s) 241
Hin1II CATG 4 cut(s) 20, 145, 200, 281
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 2 cut(s) 145, 376
HpaII CCGG 2 cut(s) 367, 371
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 62, 108
HpyAV CCTTC 2 cut(s) 116, 127
HpyCH4V TGCA 4 cut(s) 4, 25, 44, 139
Hsp92II CATG 4 cut(s) 20, 145, 200, 281
HspAI GCGC 1 cut(s) 239
KroI GCCGGC 1 cut(s) 366
KroNI GCCGGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 7 cut(s) 75, 93, 248, 275, 325, 380, 384
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 4 cut(s) 12, 126, 307, 317
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 2 cut(s) 96, 358
MflI RGATCY 1 cut(s) 110
MluCI AATT 6 cut(s) 35, 52, 81, 173, 209, 381
MlyI GAGTC 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 366
MseI TTAA 2 cut(s) 212, 354
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 2 cut(s) 367, 371
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
NaeI GCCGGC 1 cut(s) 368
NdeII GATC 1 cut(s) 110
NgoMIV GCCGGC 1 cut(s) 366
NlaIII CATG 4 cut(s) 20, 145, 200, 281
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 373
NspV TTCGAA 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 212, 354
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 263
SetI ASST 1 cut(s) 223
SfaNI GCATC 4 cut(s) 12, 126, 307, 317
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 6 cut(s) 35, 52, 81, 173, 209, 381
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 261
TaqI TCGA 1 cut(s) 120
TasI AATT 6 cut(s) 35, 52, 81, 173, 209, 381
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 212, 354
Tru9I TTAA 2 cut(s) 212, 354
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 65, 158, 191, 266
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 4 cut(s) 35, 52, 81, 381
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.