Rh1DG336300

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034294
Physical Location & Seq
Forward (+)
56190777 .. 56192693
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG336300.1

Sequence Viewer

Length: 477 bp
ATGAACCTTTCCACCACTCCCGTCGTACAAACCGGAACTTGCAGCAGTTCGCCGCCGGCTATAGATAGCTTACTGAATGAGCTCCAGTGCTCTCAGTTGCGATCAGAAGCAGTAACTTGGGACTGTTACTATGAGTGTCTGACTGGGGAGATAGCTGATACAGTGCATGAGATGAATGAGATCATCAATACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTAAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGACTGGTAGTGGCATGTTAATTGCTGTGAAGACGATTGACCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGAAATTATTCACTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.38

Weight (kDa)

4.52

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034294)

Species Orthologous Gene IDs
rosa_samantha Rh1CG320000 Rh1DG336300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 3 cut(s) 228, 274, 460
AjnI CCWGG 2 cut(s) 293, 438
AluBI AGCT 5 cut(s) 69, 82, 155, 212, 380
AluI AGCT 5 cut(s) 69, 82, 155, 212, 380
Alw21I GWGCWC 2 cut(s) 84, 92
ApeKI GCWGC 2 cut(s) 42, 380
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 2 cut(s) 84, 92
BbvI GCAGC 2 cut(s) 54, 367
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 2 cut(s) 295, 440
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 43, 53, 381
BlsI GCNGC 3 cut(s) 44, 54, 382
Bme1390I CCNGG 2 cut(s) 295, 440
BmrFI CCNGG 2 cut(s) 295, 440
BmrI ACTGGG 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 85, 148, 394
BseBI CCWGG 2 cut(s) 295, 440
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 107, 248
BseNI ACTGG 3 cut(s) 85, 148, 394
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 54, 367
BsgI GTGCAG 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 84, 92
BsiSI CCGG 2 cut(s) 33, 56
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 84, 92
Bsp143I GATC 2 cut(s) 101, 180
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 106, 247
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 3 cut(s) 85, 148, 394
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 2 cut(s) 101, 180
Bst2UI CCWGG 2 cut(s) 295, 440
Bst4CI ACNGT 2 cut(s) 125, 163
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 93, 234
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 104, 183
BstMBI GATC 2 cut(s) 101, 180
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 295, 440
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 293, 438
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 54, 367
BstV2I GAAGAC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 92, 168, 198
Cac8I GCNNGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 55
Csp6I GTAC 1 cut(s) 26
CviAII CATG 2 cut(s) 167, 400
CviJI RGCY 6 cut(s) 59, 69, 82, 155, 212, 380
CviKI_1 RGCY 6 cut(s) 59, 69, 82, 155, 212, 380
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 93, 234
DpnI GATC 2 cut(s) 103, 182
DpnII GATC 2 cut(s) 101, 180
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 293, 438
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 2 cut(s) 170, 403
FaiI YATR 6 cut(s) 62, 132, 168, 317, 342, 401
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 166, 399
Fnu4HI GCNGC 3 cut(s) 43, 53, 381
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 43, 53, 381
GluI GCNGC 3 cut(s) 43, 53, 381
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 2 cut(s) 33, 56
Hin1II CATG 2 cut(s) 170, 403
HpaII CCGG 2 cut(s) 33, 56
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 106, 141, 237
Hpy188III TCNNGA 2 cut(s) 308, 446
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 234, 425
HpyCH4III ACNGT 2 cut(s) 125, 163
HpyCH4V TGCA 3 cut(s) 42, 166, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 93, 234
Hsp92II CATG 2 cut(s) 170, 403
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 101, 180
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 54, 367
MaeIII GTNAC 2 cut(s) 112, 125
MalI GATC 2 cut(s) 103, 182
MboI GATC 2 cut(s) 101, 180
MboII GAAGA 2 cut(s) 262, 427
MhlI GDGCHC 2 cut(s) 84, 92
MluCI AATT 4 cut(s) 193, 367, 405, 461
MnlI CCTC 3 cut(s) 235, 243, 442
MroNI GCCGGC 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 3 cut(s) 257, 348, 404
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 33, 56
MspR9I CCNGG 2 cut(s) 295, 440
MvaI CCWGG 2 cut(s) 295, 440
MwoI GCNNNNNNNGC 1 cut(s) 209
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 2 cut(s) 101, 180
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 170, 403
NspI RCATGY 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 464
PkrI GCNGC 3 cut(s) 44, 54, 382
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 293, 438
PspGI CCWGG 2 cut(s) 293, 438
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 257, 348, 404
SatI GCNGC 3 cut(s) 43, 53, 381
Sau3AI GATC 2 cut(s) 101, 180
ScrFI CCNGG 2 cut(s) 295, 440
SduI GDGCHC 2 cut(s) 84, 92
SetI ASST 9 cut(s) 9, 71, 84, 157, 214, 296, 331, 382, 436
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 193, 367, 405, 461
SsiI CCGC 1 cut(s) 53
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 293, 438
TaaI ACNGT 2 cut(s) 125, 163
TasI AATT 4 cut(s) 193, 367, 405, 461
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 257, 348, 404
Tru9I TTAA 3 cut(s) 257, 348, 404
TscAI CASTG 3 cut(s) 92, 168, 205
TseI GCWGC 2 cut(s) 42, 380
TspDTI ATGAA 5 cut(s) 17, 188, 291, 293, 360
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 3 cut(s) 92, 168, 205
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.