Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0029735

Physical Location & Seq

Genomic Coordinates Forward (+)

21615757 .. 21633775

Gene Structure 18019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGATATATTTAATTTGACAAATCTTAAGTCTAAGGCAGCAGAATCAAATGCTGAAGCAGCAAATGTGGATCCTAGATTGGAGGCAATCGTGGAGAGAATGTTGAATAAGTGTATCATAGATGGCAAATACCAACAAGCTACGGAAAAAGCAATTGAATGTCAAAGACTGGATAAAATTGAGGAAGTAATCATAACTAGTGATTGTGTTCGAGGAACTATTGTATCAATGTCTCTCATCGGTATGTTAATCTCAGAGAATACAGATATGAGATTAGTGATTCTCGTGTTGGAGCTTTTAGGTACTGTGTCACTGGATTTTGTAACATTTCCCAACTCCTCCGGAATTCTTGATGTTGGTGGAAGGAATGTGACAATAAGACTGCTCTCTAAGACAAAACATGATAAGTCGGCGGCCATTGCACTGGCTGTGAAACTCTCCACTGCAGTTTTGTCAACATCAGCAAAGGCCACCAAAGCTCGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

163

Amino Acids

17.68

Weight (kDa)

5.91

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	12 - 98	2.8e-12	26S proteasome subunit RPN2, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029735)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0109511
rosa_samantha	Rh2AG212800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	2 cut(s)	68, 81
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	109, 161
AhlI	ACTAGT	1 cut(s)	200
AluBI	AGCT	3 cut(s)	143, 298, 482
AluI	AGCT	3 cut(s)	143, 298, 482
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	68, 81
Ama87I	CYCGRG	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	417, 471
ApeKI	GCWGC	2 cut(s)	41, 62
ApoI	RAATTY	1 cut(s)	348
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AvaI	CYCGRG	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BamHI	GGATCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	53, 74
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	3 cut(s)	78, 201, 490
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	42, 63, 417
BlsI	GCNGC	3 cut(s)	43, 64, 418
BmeT110I	CYCGRG	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	177, 321, 432
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	177, 321, 432
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	53, 74
BshFI	GGCC	2 cut(s)	419, 473
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	419, 473
BsoBI	CYCGRG	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	419, 473
BspCNI	CTCAG	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	68, 81
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	177, 321, 432
BssMI	GATC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	310
BstAFI	CTTAAG	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	36, 256, 393
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 422, 479
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	53, 74
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	419, 473
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	314, 425, 444
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	6 cut(s)	143, 298, 419, 431, 473, 482
CviKI_1	RGCY	6 cut(s)	143, 298, 419, 431, 473, 482
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	36, 256, 393
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	348
FaeI	CATG	1 cut(s)	407
FaiI	YATR	6 cut(s)	11, 122, 197, 248, 272, 405
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	42, 63, 417
Fsp4HI	GCNGC	3 cut(s)	42, 63, 417
FspBI	CTAG	3 cut(s)	78, 201, 490
GluI	GCNGC	3 cut(s)	42, 63, 417
HaeIII	GGCC	2 cut(s)	419, 473
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	47, 283
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	345, 353, 485
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	425, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 422, 479
HpyF3I	CTNAG	3 cut(s)	36, 256, 393
Hsp92II	CATG	1 cut(s)	407
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	158, 302, 358, 413
Lsp1109I	GCAGC	2 cut(s)	53, 74
MaeI	CTAG	3 cut(s)	78, 201, 490
MaeIII	GTNAC	3 cut(s)	312, 325, 373
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	4 cut(s)	16, 156, 180, 348
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	79, 178, 209, 352
MroI	TCCGGA	1 cut(s)	344
MseI	TTAA	3 cut(s)	15, 30, 251
MslI	CAYNNNNRTG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	62, 422, 479
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	312, 373
PfeI	GAWTC	2 cut(s)	47, 283
PkrI	GCNGC	3 cut(s)	43, 64, 418
PspN4I	GGNNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	15, 30, 251
SatI	GCNGC	3 cut(s)	42, 63, 417
Sau3AI	GATC	1 cut(s)	73
SetI	ASST	4 cut(s)	145, 300, 307, 484
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	4 cut(s)	16, 156, 180, 348
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	3 cut(s)	78, 201, 490
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	16, 156, 180, 348
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	47, 283
Tru1I	TTAA	3 cut(s)	15, 30, 251
Tru9I	TTAA	3 cut(s)	15, 30, 251
TscAI	CASTG	3 cut(s)	321, 432, 451
TseFI	GTSAC	2 cut(s)	312, 373
TseI	GCWGC	2 cut(s)	41, 62
Tsp45I	GTSAC	2 cut(s)	312, 373
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	3 cut(s)	321, 432, 451
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	348
XspI	CTAG	3 cut(s)	78, 201, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.