Rh2AG636800

cysteine-rich receptor-like protein kinase 43

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
86160258 .. 86170082
9825 bp
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UTR
Exon/CDS
Intron
Rh2AG636800.1

Sequence Viewer

Length: 417 bp
ATGAAGCCCATAAGCTTGGTTAAGGAGCATATGGGCACTTTACATGATGGTAGAGAAATTGCTATAAAACGTTTGTTCATAACCGGAAAAACCCAAACTCAAGAGGTGTTCAATGAAATTCATATCATTAGCAAAGCTCAACATAAGAACTTGGTTCGCTTCCTTGGCTGCTGCTTCACCAACATCAGCTGCCTCCTTATCTACGAGTTCCTAGCAAACAGAAGCCTCGACCTTATATTATTTGCCATGTTTCACTTAACAATGAGAGAGAGAGTCACAGAGAGACGTCTCCACCAAATGAGGAGTAAACGTGGCAAGTGTACCATAGGACCTGTAAATAATGCAGGTGGAAGTGCACCATTGGGTCGTCTCCACCAAATCAGGAGTAAACGTGGCGAGCGTGCGATAGACCTGTAA

Protein Analysis

138

Amino Acids

15.84

Weight (kDa)

10.34

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 91 1.2e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 96 4.5e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0033142)

Species Orthologous Gene IDs
rosa_samantha Rh2AG636800 Rh2BG650200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
AatII GACGTC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 335
AclI AACGTT 1 cut(s) 70
AcsI RAATTY 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 1 cut(s) 322
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 3 cut(s) 15, 137, 189
AluI AGCT 3 cut(s) 15, 137, 189
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 277, 293, 374
Alw44I GTGCAC 1 cut(s) 354
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 3 cut(s) 168, 171, 189
ApoI RAATTY 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 38, 358
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 155, 158, 176
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 277, 293, 374
BfaI CTAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 3 cut(s) 169, 172, 190
BlsI GCNGC 3 cut(s) 170, 173, 191
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 83
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 376, 406
BseDI CCNNGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 316
BseSI GKGCMC 2 cut(s) 38, 358
BseXI GCAGC 3 cut(s) 155, 158, 176
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 84
BsmAI GTCTC 3 cut(s) 277, 293, 374
BsmBI CGTCTC 3 cut(s) 277, 293, 374
Bsp1286I GDGCHC 2 cut(s) 38, 358
BspMI ACCTGC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 398, 402
BstMAI GTCTC 3 cut(s) 277, 293, 374
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSLI GKGCMC 2 cut(s) 38, 358
BstV1I GCAGC 3 cut(s) 155, 158, 176
BstXI CCANNNNNNTGG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 398, 402
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 321
CviAII CATG 2 cut(s) 44, 247
CviJI RGCY 6 cut(s) 7, 15, 137, 168, 189, 225
CviKI_1 RGCY 6 cut(s) 7, 15, 137, 168, 189, 225
CviQI GTAC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 3 cut(s) 277, 293, 374
FaeI CATG 2 cut(s) 47, 250
FatI CATG 2 cut(s) 43, 246
FauNDI CATATG 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 169, 172, 190
Fsp4HI GCNGC 3 cut(s) 169, 172, 190
FspBI CTAG 1 cut(s) 212
GluI GCNGC 3 cut(s) 169, 172, 190
HapII CCGG 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 47, 250
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 273
HpaII CCGG 1 cut(s) 84
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 4 cut(s) 308, 321, 356, 389
Hpy188III TCNNGA 2 cut(s) 101, 382
Hpy8I GTNNAC 4 cut(s) 308, 321, 356, 389
HpyCH4IV ACGT 4 cut(s) 70, 286, 310, 391
HpyCH4V TGCA 2 cut(s) 344, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpySE526I ACGT 4 cut(s) 70, 286, 310, 391
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 47, 250
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 97, 330, 345, 367
Lsp1109I GCAGC 3 cut(s) 155, 158, 176
MaeI CTAG 1 cut(s) 212
MaeII ACGT 4 cut(s) 70, 286, 310, 391
MaeIII GTNAC 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 38, 358
MluCI AATT 2 cut(s) 57, 117
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 4 cut(s) 97, 203, 236, 294
MseI TTAA 2 cut(s) 21, 257
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 165
NdeI CATATG 1 cut(s) 30
NlaIII CATG 2 cut(s) 47, 250
NmuCI GTSAC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PkrI GCNGC 3 cut(s) 170, 173, 191
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 329
PspPI GGNCC 1 cut(s) 329
PspPPI RGGWCCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 21, 257
SatI GCNGC 3 cut(s) 169, 172, 190
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 282
SduI GDGCHC 2 cut(s) 38, 358
SinI GGWCC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 2 cut(s) 57, 117
SspMI CTAG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 163
TaiI ACGT 4 cut(s) 73, 289, 313, 394
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 57, 117
Tru1I TTAA 2 cut(s) 21, 257
Tru9I TTAA 2 cut(s) 21, 257
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 3 cut(s) 168, 171, 189
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 17, 67, 110, 129
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 117
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.