Rh2AG656900

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0024819
Physical Location & Seq
Reverse (-)
87329876 .. 87331066
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG656900.1

Sequence Viewer

Length: 546 bp
ATGTTTTGGGCCGTCGTCTTCTACCCTCTTTTAAGTGTTCTTGAATTTCCGTCGGAAAAGGCATGTATTTATTTAAATTCCAAGGTTTCATATTCATTTGAAGAGTTTGTTCATGGTGGCGGCGTGCTGATGCTGATCAGTGTTGTGGGGTTGAGCATCGATTTTGTTGTGCTGAATTTGACGAAGCACTCGTCGTATCTCATTTACAACCCCACGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGGTTGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCCGCTCACGCCGTTTTTGTGACATCAGTTATCCTTTTCCAAATTGCAATCTACGAACCTGATCATTTTGTCACACAAGCTAGCTTCACATTGGTCTCACCTTTATGTATGCAGCAAGGAAGTCAGAAATTATCCAAGATTGCCATTGGAATCGTCTTTGCCGTGTGGCTATTCGCTGCAGTTTGTTGCTTGGTGGCTCTGCCAACTCATTATTGGCTTTGGCTCATCTCTATCTTCGAGTTTTCAAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

6.49

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024819)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174301
rosa_samantha Rh2AG656900 Rh2BG667900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AciI CCGC 2 cut(s) 120, 294
AcsI RAATTY 3 cut(s) 44, 76, 175
AfaI GTAC 2 cut(s) 229, 241
AgsI TTSAA 4 cut(s) 44, 101, 235, 537
AluBI AGCT 3 cut(s) 272, 371, 375
AluI AGCT 3 cut(s) 272, 371, 375
Alw26I GTCTC 1 cut(s) 391
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 272, 403, 467
ApoI RAATTY 3 cut(s) 44, 76, 175
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 381
AsuNHI GCTAGC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 259, 415, 454
BceAI ACGGC 2 cut(s) 287, 437
BclI TGATCA 2 cut(s) 135, 352
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 2 cut(s) 267, 468
BisI GCNGC 4 cut(s) 121, 273, 404, 468
BlsI GCNGC 4 cut(s) 122, 274, 405, 469
BmcAI AGTACT 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 9
BmsI GCATC 2 cut(s) 120, 165
BmtI GCTAGC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 134
BseXI GCAGC 3 cut(s) 259, 415, 454
BshFI GGCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 391
BsnI GGCC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 135, 352
BspACI CCGC 2 cut(s) 120, 294
BspANI GGCC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 135, 352
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 125, 373
BstKTI GATC 2 cut(s) 138, 355
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 135, 352
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 267, 468
BstV1I GCAGC 3 cut(s) 259, 415, 454
BstV2I GAAGAC 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 125, 373
Cfr13I GGNCC 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 2 cut(s) 228, 240
CviAII CATG 2 cut(s) 63, 113
CviJI RGCY 8 cut(s) 11, 272, 371, 375, 460, 488, 508, 514
CviKI_1 RGCY 8 cut(s) 11, 272, 371, 375, 460, 488, 508, 514
CviQI GTAC 2 cut(s) 228, 240
DpnI GATC 2 cut(s) 137, 354
DpnII GATC 2 cut(s) 135, 352
DraI TTTAAA 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 66, 116
FaiI YATR 6 cut(s) 64, 91, 114, 397, 401, 544
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FatI CATG 2 cut(s) 62, 112
FbaI TGATCA 2 cut(s) 135, 352
Fnu4HI GCNGC 4 cut(s) 121, 273, 404, 468
Fsp4HI GCNGC 4 cut(s) 121, 273, 404, 468
FspBI CTAG 1 cut(s) 372
GluI GCNGC 4 cut(s) 121, 273, 404, 468
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 2 cut(s) 66, 116
HinfI GANTC 1 cut(s) 441
HphI GGTGA 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 55, 221, 250, 417
Hpy188III TCNNGA 2 cut(s) 41, 537
Hpy99I CGWCG 3 cut(s) 17, 55, 196
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 275, 338, 403, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 2 cut(s) 66, 116
Ksp22I TGATCA 2 cut(s) 135, 352
Kzo9I GATC 2 cut(s) 135, 352
LpnPI CCDG 2 cut(s) 279, 363
Lsp1109I GCAGC 3 cut(s) 259, 415, 454
LweI GCATC 2 cut(s) 120, 165
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 310, 361
MalI GATC 2 cut(s) 137, 354
MbiI CCGCTC 1 cut(s) 296
MboI GATC 2 cut(s) 135, 352
MboII GAAGA 3 cut(s) 10, 113, 517
MluCI AATT 5 cut(s) 44, 76, 175, 333, 419
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 36, 246
MseI TTAA 2 cut(s) 32, 74
MslI CAYNNNNRTG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 135, 352
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 2 cut(s) 66, 116
NmuCI GTSAC 2 cut(s) 310, 361
NspI RCATGY 1 cut(s) 66
PcsI WCGNNNNNNNCGW 2 cut(s) 188, 450
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 4 cut(s) 122, 274, 405, 469
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 472
RsaI GTAC 2 cut(s) 229, 241
RsaNI GTAC 2 cut(s) 228, 240
RseI CAYNNNNRTG 1 cut(s) 394
SaqAI TTAA 2 cut(s) 32, 74
SatI GCNGC 4 cut(s) 121, 273, 404, 468
Sau3AI GATC 2 cut(s) 135, 352
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 1 cut(s) 229
SetI ASST 9 cut(s) 87, 218, 257, 268, 274, 352, 373, 377, 394
SfaNI GCATC 2 cut(s) 120, 165
SfcI CTRYAG 2 cut(s) 267, 468
SmiI ATTTAAAT 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 394
Sse9I AATT 5 cut(s) 44, 76, 175, 333, 419
SsiI CCGC 2 cut(s) 120, 294
SspMI CTAG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 81
SwaI ATTTAAAT 1 cut(s) 75
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 159, 528
TasI AATT 5 cut(s) 44, 76, 175, 333, 419
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 2 cut(s) 32, 74
Tru9I TTAA 2 cut(s) 32, 74
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 310, 361
TseI GCWGC 3 cut(s) 272, 403, 467
Tsp45I GTSAC 2 cut(s) 310, 361
TspDTI ATGAA 3 cut(s) 78, 84, 101
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 145
XapI RAATTY 3 cut(s) 44, 76, 175
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XspI CTAG 1 cut(s) 372
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.