Rh2AG666300

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0025018
Physical Location & Seq
Reverse (-)
88135054 .. 88139258
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG666300.1

Sequence Viewer

Length: 621 bp
ATGGAGCTTCATTTTGGGTTCTATTACATTTTTTTGTTTCTTTGTCTAGATCCATGTTCATGTTATTATATTCTGACTAATTTGTCCACATGTGTATCAGTTTTGATGCAGTCAATTCGTCAGGCTATTGAAAAGGAACACCACTCAATCCAGAAGAGTGATGTCATTATCTTCTTTCAGGTTGCTCAGTTCGTTACTTCTTTCCAATATCACAGGCATTCAATTTCTAAGCCAAGCCTGAGAGCTGAAGCAGACACAATTGAAGTTCCCATAGGTACAGAGGCTGATAGAACATTCTTTAGAGGTGATATATGTGGACCAATTGCAACCTCAATGAATGAGTCGATGTTCCAACTAGTCATTTCGAAGTGGCGTTATGTATTCGATGGGTTGAAGGAAACACATGAGTACAAGTTTTTGTCTGCAGCTAGTTCTCTGATGAAAGAAATGATTTGCATGCTAGATTTGGTGCTCAAGTCATTGCCAGAAGACTCCAAGGAGCCTCAAACAGCTCGCATACTTCTGTACAAGTTATTTTATGATCAGACCGAAGAGGGGATGACCCATTTTCTCTTAAATTTGCTGAAAACGTTTGACACTCACAAACAACCAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

206

Amino Acids

24.03

Weight (kDa)

6.23

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025018)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0072581
rosa_samantha Rh2AG666300 Rh2BG677700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AclI AACGTT 1 cut(s) 590
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 3 cut(s) 277, 410, 527
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 4 cut(s) 131, 222, 263, 394
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 4 cut(s) 7, 245, 428, 512
AluI AGCT 4 cut(s) 7, 245, 428, 512
Alw21I GWGCWC 1 cut(s) 474
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 577
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 317
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BclI TGATCA 1 cut(s) 541
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 4 cut(s) 47, 356, 429, 461
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 501
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 564
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 2 cut(s) 200, 230
BseXI GCAGC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 555
BsmI GAATGC 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 474
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 2 cut(s) 49, 541
BspCNI CTCAG 2 cut(s) 199, 231
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 2 cut(s) 49, 541
BssT1I CCWWGG 1 cut(s) 495
Bst6I CTCTTC 2 cut(s) 149, 546
BstAUI TGTACA 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 458, 514
BstDEI CTNAG 3 cut(s) 186, 228, 239
BstF5I GGATG 1 cut(s) 564
BstKTI GATC 2 cut(s) 52, 544
BstMBI GATC 2 cut(s) 49, 541
BstNSI RCATGY 2 cut(s) 93, 460
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 458, 514
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 276, 409, 526
CviAII CATG 5 cut(s) 54, 60, 90, 404, 457
CviJI RGCY 9 cut(s) 7, 125, 232, 237, 245, 284, 428, 502, 512
CviKI_1 RGCY 9 cut(s) 7, 125, 232, 237, 245, 284, 428, 502, 512
CviQI GTAC 3 cut(s) 276, 409, 526
DdeI CTNAG 3 cut(s) 186, 228, 239
DpnI GATC 2 cut(s) 51, 543
DpnII GATC 2 cut(s) 49, 541
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 149, 546
EarI CTCTTC 2 cut(s) 149, 546
Eco130I CCWWGG 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 5 cut(s) 57, 63, 93, 407, 460
FatI CATG 5 cut(s) 53, 59, 89, 403, 456
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 4 cut(s) 47, 356, 429, 461
GluI GCNGC 1 cut(s) 426
Hin1II CATG 5 cut(s) 57, 63, 93, 407, 460
HinfI GANTC 2 cut(s) 341, 491
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 87, 317
Hpy188I TCNGA 3 cut(s) 75, 438, 546
Hpy188III TCNNGA 2 cut(s) 47, 151
Hpy8I GTNNAC 2 cut(s) 87, 317
HpyAV CCTTC 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 4 cut(s) 109, 326, 425, 456
HpyF3I CTNAG 3 cut(s) 186, 228, 239
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 5 cut(s) 57, 63, 93, 407, 460
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 49, 541
LmnI GCTCC 2 cut(s) 4, 499
LpnPI CCDG 6 cut(s) 107, 164, 164, 199, 251, 498
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 96
MaeI CTAG 4 cut(s) 47, 356, 429, 461
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 51, 543
MboI GATC 2 cut(s) 49, 541
MboII GAAGA 4 cut(s) 163, 166, 500, 563
MfeI CAATTG 2 cut(s) 258, 321
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 6 cut(s) 79, 114, 222, 258, 321, 577
MlyI GAGTC 2 cut(s) 350, 485
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 5 cut(s) 274, 296, 340, 513, 547
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 1 cut(s) 58
MunI CAATTG 2 cut(s) 258, 321
Mva1269I GAATGC 1 cut(s) 217
NdeII GATC 2 cut(s) 49, 541
NlaIII CATG 5 cut(s) 57, 63, 93, 407, 460
NlaIV GGNNCC 1 cut(s) 501
NspI RCATGY 2 cut(s) 93, 460
NspV TTCGAA 1 cut(s) 365
PaeI GCATGC 1 cut(s) 460
PciI ACATGT 1 cut(s) 89
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 349, 485
PpsI GAGTC 2 cut(s) 349, 485
PscI ACATGT 1 cut(s) 89
Psp1406I AACGTT 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 277, 410, 527
RsaNI GTAC 3 cut(s) 276, 409, 526
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 49, 541
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 2 cut(s) 350, 485
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 355
SphI GCATGC 1 cut(s) 460
Sse9I AATT 6 cut(s) 79, 114, 222, 258, 321, 577
SspMI CTAG 4 cut(s) 47, 356, 429, 461
StyI CCWWGG 1 cut(s) 495
TaiI ACGT 1 cut(s) 593
TaqI TCGA 3 cut(s) 344, 365, 384
TaqII GACCGA 1 cut(s) 563
TasI AATT 6 cut(s) 79, 114, 222, 258, 321, 577
TatI WGTACW 2 cut(s) 408, 525
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 48, 350, 455
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 577
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 2 cut(s) 93, 460
XspI CTAG 4 cut(s) 47, 356, 429, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.