Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0033002

Physical Location & Seq

Genomic Coordinates Forward (+)

9759668 .. 9763324

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTATGCATCTTTTGTGTTCATTTCTATAGGGACAATTGAAATTCACAGCAGGAATAGAGTTTCACAGACAAGCAGCAGCACAATGAGAAGTCAATTTTCTCATTTTTCAGAAGCAACAACATCAACACTAAGCCCAAGATTTGATGATGATCAGCAGTCAACGGATGGCGAAATTTTGGAGACATCAACTTTGAGAGTCTTCAGTTTTGCAGATATGAAATCTGCTACCAAGAACTTCAAGTCAGATCAAATTCTGGGTGAGGGAGGATTTGGCAGAGTTTTCAAAGGTTGGGTGGATGAAAAAACTCTTCAACCATGTAAGGCTGGCACTGGAATGATGGTTGCTGTCAAGAAATTAAACCCTGAAAGTATGCAAGGTTTCCAAGAGTGGCAGTCAGAAGTGAACTTTCTAGGAAGGCTTTCTCATCCCAACCTTGTCAAGCTATTGGGATACTGTTGGGAAGACACGGAGCTACTCCTTGTTTATGAGTTCATGCAGAAAGGTAGCTTGGAGAATCATCTTTTCAGAAGTACGTACAAAATCATTGTGAAAACAAAACATTTTTGCTTAAGGTCATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.16

Weight (kDa)

7.74

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 178	2.4e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 185	3.5e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033002)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG112600 Rh2BG115300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	42, 174, 252
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	2 cut(s)	535, 539
AflII	CTTAAG	1 cut(s)	571
AgsI	TTSAA	4 cut(s)	41, 241, 286, 314
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	3 cut(s)	445, 475, 510
AluI	AGCT	3 cut(s)	445, 475, 510
Alw26I	GTCTC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	75, 78
ApoI	RAATTY	3 cut(s)	42, 174, 252
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	193, 471
BbvI	GCAGC	2 cut(s)	87, 90
BccI	CCATC	2 cut(s)	161, 334
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	571
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	76, 79
BlsI	GCNGC	2 cut(s)	77, 80
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	2 cut(s)	193, 471
BsaAI	YACGTR	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	150
BseGI	GGATG	3 cut(s)	172, 304, 427
BseJI	GATNNNNATC	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	87, 90
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	151, 247
BspHI	TCATGA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	151, 247
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	3 cut(s)	172, 304, 427
BstKTI	GATC	2 cut(s)	154, 250
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	151, 247
BstSFI	CTRYAG	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	87, 90
BstV2I	GAAGAC	2 cut(s)	193, 471
BsuI	GTATCC	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	172, 304, 427
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	534, 538
CviAII	CATG	3 cut(s)	318, 496, 585
CviJI	RGCY	6 cut(s)	135, 326, 421, 445, 475, 510
CviKI_1	RGCY	6 cut(s)	135, 326, 421, 445, 475, 510
CviQI	GTAC	2 cut(s)	534, 538
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	153, 249
DpnII	GATC	2 cut(s)	151, 247
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco105I	TACGTA	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	3 cut(s)	321, 499, 588
FaiI	YATR	8 cut(s)	6, 29, 218, 319, 374, 489, 497, 586
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	317, 495, 584
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	76, 79
FokI	GGATG	3 cut(s)	179, 311, 414
Fsp4HI	GCNGC	2 cut(s)	76, 79
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	2 cut(s)	76, 79
Hin1II	CATG	3 cut(s)	321, 499, 588
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	198, 517
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	162, 406
Hpy188I	TCNGA	4 cut(s)	112, 247, 400, 530
Hpy188III	TCNNGA	2 cut(s)	352, 585
Hpy8I	GTNNAC	2 cut(s)	162, 406
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	4 cut(s)	8, 212, 376, 499
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	3 cut(s)	321, 499, 588
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 247
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	5 cut(s)	37, 242, 312, 318, 378
Lsp1109I	GCAGC	2 cut(s)	87, 90
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	536
MalI	GATC	2 cut(s)	153, 249
MboI	GATC	2 cut(s)	151, 247
MboII	GAAGA	3 cut(s)	193, 302, 476
MfeI	CAATTG	1 cut(s)	36
MluCI	AATT	6 cut(s)	36, 42, 95, 174, 252, 356
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	256, 260
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	2 cut(s)	359, 572
MslI	CAYNNNNRTG	2 cut(s)	335, 583
MspCI	CTTAAG	1 cut(s)	571
MunI	CAATTG	1 cut(s)	36
NdeII	GATC	2 cut(s)	151, 247
NlaIII	CATG	3 cut(s)	321, 499, 588
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	77, 80
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	537
RsaI	GTAC	2 cut(s)	535, 539
RsaNI	GTAC	2 cut(s)	534, 538
RseI	CAYNNNNRTG	2 cut(s)	335, 583
SaqAI	TTAA	2 cut(s)	359, 572
SatI	GCNGC	2 cut(s)	76, 79
Sau3AI	GATC	2 cut(s)	151, 247
SchI	GAGTC	1 cut(s)	207
SetI	ASST	9 cut(s)	292, 382, 438, 447, 477, 508, 512, 539, 578
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	335, 583
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SnaBI	TACGTA	1 cut(s)	537
Sse9I	AATT	6 cut(s)	36, 42, 95, 174, 252, 356
SspMI	CTAG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	539
TasI	AATT	6 cut(s)	36, 42, 95, 174, 252, 356
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	359, 572
Tru9I	TTAA	2 cut(s)	359, 572
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	2 cut(s)	75, 78
TspDTI	ATGAA	4 cut(s)	10, 233, 315, 484
TspGWI	ACGGA	2 cut(s)	179, 485
TspRI	CASTG	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	571
XapI	RAATTY	3 cut(s)	42, 174, 252
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.