Rh2BG177500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0033015
Physical Location & Seq
Forward (+)
15752322 .. 15755486
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG177500.1

Sequence Viewer

Length: 363 bp
ATGGCTGCTGCGCTTGCTAGCGGCGCAGTGTTAGGCCAAATCAAGGCACGGTCAAACCGGAAGACTTTGGCAGCTCCCAAGTTTGTTGAACTACACCGGCCTTCAGATCTTTCTTGTTCCACTGATTCAACGTTTTCTGGACATATTGATTCAGATTTTCATCTTGTACCATCATCACAAACAAATGGTATTAGTCGGGGGAGAAGCTTTAGGAGCATCGTTTCTGAGACAGCAGAGGATGAAAAGGAATTGGATTTTCCAGAGGATGAACTACAAAATTTTAGAGTACAAATGGAGGGGGAAGTTGAGCTAATTCACAAGTGCTCCAAGGTTGGTGTGCAATACCTGAACCTCCACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

120

Amino Acids

13.27

Weight (kDa)

5.92

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033015)

Species Orthologous Gene IDs
rosa_samantha Rh2AG170100 Rh2BG177500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 358
AclI AACGTT 1 cut(s) 131
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 168, 288
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 89, 129
AluBI AGCT 3 cut(s) 74, 207, 310
AluI AGCT 3 cut(s) 74, 207, 310
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 221
AoxI GGCC 2 cut(s) 34, 98
ApeKI GCWGC 3 cut(s) 5, 8, 71
ApoI RAATTY 1 cut(s) 277
AspLEI GCGC 2 cut(s) 13, 26
AsuNHI GCTAGC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 18, 361
BglII AGATCT 1 cut(s) 106
BisI GCNGC 4 cut(s) 6, 9, 22, 72
BlsI GCNGC 4 cut(s) 7, 10, 23, 73
BmsI GCATC 1 cut(s) 225
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 244, 271
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 36, 100
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 2 cut(s) 58, 97
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 36, 100
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 21, 358
BspANI GGCC 2 cut(s) 36, 100
BspCNI CTCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 15, 19
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 244, 271
BstHHI GCGC 2 cut(s) 13, 26
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 213
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 36, 100
BtsCI GGATG 2 cut(s) 244, 271
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 120
Cac8I GCNNGC 2 cut(s) 15, 19
CfoI GCGC 2 cut(s) 13, 26
Cfr10I RCCGGY 1 cut(s) 96
Csp6I GTAC 2 cut(s) 167, 287
CviJI RGCY 6 cut(s) 5, 36, 74, 100, 207, 310
CviKI_1 RGCY 6 cut(s) 5, 36, 74, 100, 207, 310
CviQI GTAC 2 cut(s) 167, 287
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaiI YATR 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 6, 9, 22, 72
FokI GGATG 2 cut(s) 251, 278
Fsp4HI GCNGC 4 cut(s) 6, 9, 22, 72
FspBI CTAG 2 cut(s) 18, 361
GlaI GCGC 2 cut(s) 12, 25
GluI GCNGC 4 cut(s) 6, 9, 22, 72
HaeIII GGCC 2 cut(s) 36, 100
HapII CCGG 2 cut(s) 58, 97
HhaI GCGC 2 cut(s) 13, 26
Hin6I GCGC 2 cut(s) 11, 24
HinP1I GCGC 2 cut(s) 11, 24
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 125, 149
HpaII CCGG 2 cut(s) 58, 97
Hpy188I TCNGA 3 cut(s) 106, 154, 226
Hpy188III TCNNGA 2 cut(s) 138, 260
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 213
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 131
HspAI GCGC 2 cut(s) 11, 24
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 3 cut(s) 79, 213, 329
LpnPI CCDG 5 cut(s) 71, 110, 123, 273, 359
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 18, 361
MaeII ACGT 1 cut(s) 131
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 73
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 3 cut(s) 248, 277, 312
MnlI CCTC 4 cut(s) 229, 256, 289, 362
MspI CCGG 2 cut(s) 58, 97
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 213
NdeII GATC 1 cut(s) 106
NheI GCTAGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 125, 149
PkrI GCNGC 4 cut(s) 7, 10, 23, 73
Psp1406I AACGTT 1 cut(s) 131
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 2 cut(s) 168, 288
RsaNI GTAC 2 cut(s) 167, 287
SatI GCNGC 4 cut(s) 6, 9, 22, 72
Sau3AI GATC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 326
SetI ASST 7 cut(s) 76, 134, 209, 312, 333, 348, 354
SfaNI GCATC 1 cut(s) 225
Sse9I AATT 3 cut(s) 248, 277, 312
SsiI CCGC 2 cut(s) 21, 358
SspMI CTAG 2 cut(s) 18, 361
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 134
TasI AATT 3 cut(s) 248, 277, 312
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 2 cut(s) 125, 149
TscAI CASTG 2 cut(s) 33, 127
TseI GCWGC 3 cut(s) 5, 8, 71
TspDTI ATGAA 3 cut(s) 149, 255, 282
TspRI CASTG 2 cut(s) 33, 127
XapI RAATTY 1 cut(s) 277
XspI CTAG 2 cut(s) 18, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.