Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0033027

Physical Location & Seq

Genomic Coordinates Forward (+)

23353871 .. 23354625

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCATGGAATCGTCGACGAGAAGACTGATGTATTTGCATATGGAGTTTTATTACTGGAGATCATAACAGGTCGTCGTGCAGTTGATAACACTCAACAAAGCCTTGTGATATGGGCAAAACCACTTCTGGATTCGGCCAATGTCAAGGAACTAGCAGATCCTCGATTAGAAGATAACTATGATCCGGTAGAGATGAAAAGAGCCATGTCGGCAGCTTCAATGTGCATTCGTCACCAATCCACCAAGCGTCCATACATGACTCGGGTAGTGAAAGTACTCGAGGGGGAGGATGGACTTGGAGAACAATTGAAACAAAAGTCTACACAAGTGAGATCACTCGTCTTGGATGCTTGTGACTTGGAAGATTATACTTGTTCTAACTATCTCAGCGACCTAACTCGCCATCGGCAACTAGTAATGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

5.36

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033027)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG234600 Rh2CG225900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	15, 320
AclWI	GGATC	2 cut(s)	152, 176
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	219, 310
AhlI	ACTAGT	1 cut(s)	412
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
AlwI	GGATC	2 cut(s)	152, 176
Ama87I	CYCGRG	2 cut(s)	261, 278
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	261, 278
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	284, 411
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	2 cut(s)	152, 413
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmcAI	AGTACT	1 cut(s)	276
BmeT110I	CYCGRG	2 cut(s)	261, 278
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	295, 352
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	261, 278
BsiSI	CCGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	261, 278
Bsp143I	GATC	5 cut(s)	60, 157, 181, 332, 421
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	399
BspPI	GGATC	2 cut(s)	152, 176
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	60, 157, 181, 332, 421
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	295, 352
BstKTI	GATC	5 cut(s)	63, 160, 184, 335, 424
BstMBI	GATC	5 cut(s)	60, 157, 181, 332, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	295, 352
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	5, 205, 256
CviJI	RGCY	4 cut(s)	102, 137, 203, 215
CviKI_1	RGCY	4 cut(s)	102, 137, 203, 215
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	5 cut(s)	62, 159, 183, 334, 423
DpnII	GATC	5 cut(s)	60, 157, 181, 332, 421
EaeI	YGGCCR	1 cut(s)	135
Eco88I	CYCGRG	2 cut(s)	261, 278
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 208, 259
FatI	CATG	3 cut(s)	4, 204, 255
FauNDI	CATATG	1 cut(s)	40
FblI	GTMKAC	2 cut(s)	15, 320
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	302, 359
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	152, 413
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	8, 208, 259
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	9, 131, 259
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	16, 321
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	16, 321
Hpy99I	CGWCG	3 cut(s)	17, 20, 78
HpyCH4V	TGCA	4 cut(s)	4, 38, 80, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	386
Hsp92II	CATG	3 cut(s)	8, 208, 259
Kzo9I	GATC	5 cut(s)	60, 157, 181, 332, 421
LpnPI	CCDG	4 cut(s)	41, 54, 113, 198
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	152, 413
MaeIII	GTNAC	2 cut(s)	230, 353
MalI	GATC	5 cut(s)	62, 159, 183, 334, 423
MboI	GATC	5 cut(s)	60, 157, 181, 332, 421
MboII	GAAGA	3 cut(s)	34, 182, 374
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	171, 274, 280
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	5 cut(s)	60, 157, 181, 332, 421
NlaIII	CATG	3 cut(s)	8, 208, 259
NmuCI	GTSAC	2 cut(s)	230, 353
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	278
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	9, 131
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SalI	GTCGAC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	60, 157, 181, 332, 421
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	1 cut(s)	253
SetI	ASST	3 cut(s)	73, 217, 396
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	278
SgrDI	CGTCGACG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	152, 413
TaqI	TCGA	3 cut(s)	15, 163, 279
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	9, 131
TseFI	GTSAC	2 cut(s)	230, 353
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	2 cut(s)	230, 353
TspDTI	ATGAA	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	15, 320
XspI	CTAG	2 cut(s)	152, 413
ZrmI	AGTACT	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.