Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0031330

Physical Location & Seq

Genomic Coordinates Forward (+)

31050996 .. 31051331

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGAAGCATATATAGCCAAGATATGGGCAACACTTGTGCAAGCAGCAGCGCTTCCTCCGGTTTTAGACCCTCCATACACGAGAACTTGAATGCATCTCTTTCCCCAATAATCCGCTCACATCAAAAAAGATTTCCAAGCACCGATGGTCATCCCAATGCTCTCAAGAACATTAATCCTGATGCTCTCAAAAACATCAACAACTTTACTCTCTTACAGGCCTCTATAAAAGATATTGTCAACCACACTGAAGGTGGTGCATACAGGAGATCTCATTCAACGTTAGACTTCCGAAATTTTGATCCTGAGAAGATGTTTGGATTCGACAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

111

Amino Acids

12.28

Weight (kDa)

8.89

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031330)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004968.1_g000012
rosa_samantha	Rh2BG282700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	281
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	91, 279
AlwI	GGATC	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	45, 48
ApoI	RAATTY	1 cut(s)	295
AseI	ATTAAT	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	57, 60
BccI	CCATC	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	2 cut(s)	46, 49
BlsI	GCNGC	2 cut(s)	47, 50
BmsI	GCATC	2 cut(s)	104, 172
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	150
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	57, 60
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	269, 301
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	117
BssMI	GATC	2 cut(s)	269, 301
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	272, 304
BstMBI	GATC	2 cut(s)	269, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	57, 60
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	53
CviJI	RGCY	2 cut(s)	18, 221
CviKI_1	RGCY	2 cut(s)	18, 221
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	271, 303
DpnII	GATC	2 cut(s)	269, 301
Eco147I	AGGCCT	1 cut(s)	221
Eco47III	AGCGCT	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	97
FaiI	YATR	8 cut(s)	11, 13, 15, 26, 77, 227, 262, 334
Fnu4HI	GCNGC	2 cut(s)	46, 49
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	46, 49
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	46, 49
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	3 cut(s)	166, 179, 305
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	41, 95, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	281
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	269, 301
LpnPI	CCDG	5 cut(s)	73, 192, 203, 250, 318
Lsp1109I	GCAGC	2 cut(s)	57, 60
LweI	GCATC	2 cut(s)	104, 172
MaeII	ACGT	1 cut(s)	281
MalI	GATC	2 cut(s)	271, 303
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	269, 301
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	3 cut(s)	67, 82, 232
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	269, 301
NsiI	ATGCAT	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	47, 50
PshBI	ATTAAT	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	46, 49
Sau3AI	GATC	2 cut(s)	269, 301
SetI	ASST	2 cut(s)	256, 284
SfaNI	GCATC	2 cut(s)	104, 172
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	295
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	45, 48
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.