Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022636

Physical Location & Seq

Genomic Coordinates Reverse (-)

49982137 .. 49983395

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG361100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTATTTTGGCATCCTATAGCAGAAAATGATGCAAAAAATGAAGAGGCTGATATTGAGGAGCTCATCAAAGAAGTTGCAGATCAGAGAAATATTGTTGCCTCTGGTGGACTTGGAGGGGAGGTATTCATGTGGGATCTCGAAGCAGCCCTTGCTCCGGTCTCAAAGTCAGGTGATTCTGTGGAAGATGATTGTTCAAATGCCACCAATGGTTCTGGAAATGCACAACCGATTACAAGTTTACGTACTATCAGCTCTAGCAACAACATTTCTATGCACACAACTCAGGCACATGGATATGTTCCAATCTCTGCCAAAGTCCATAAAGAATCAGTTTATGCACTGGCAATGCATGATAGTGGATCACTTCTTGTCTCTGGTGGAACATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

DUF3337 WD40

Protein Analysis

131

Amino Acids

13.85

Weight (kDa)

4.58

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022636)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132051
rosa_roxburghii	Rroxscaffold_3G00237100
rosa_samantha	Rh2BG361100 Rh2BG376700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	144, 370
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	198
AluBI	AGCT	2 cut(s)	64, 255
AluI	AGCT	2 cut(s)	64, 255
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	166, 379
AlwI	GGATC	2 cut(s)	144, 370
ApeKI	GCWGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	166, 379
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	2 cut(s)	22, 22
BsaAI	YACGTR	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	166, 379
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	82, 136, 362
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	144, 370
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	82, 136, 362
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	85, 139, 365
BstMAI	GTCTC	2 cut(s)	166, 379
BstMBI	GATC	3 cut(s)	82, 136, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	18
BstSNI	TACGTA	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	4 cut(s)	130, 293, 353, 393
CviJI	RGCY	4 cut(s)	50, 64, 149, 255
CviKI_1	RGCY	4 cut(s)	50, 64, 149, 255
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	84, 138, 364
DpnII	GATC	3 cut(s)	82, 136, 362
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	64
Eco105I	TACGTA	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoT22I	ATGCAT	2 cut(s)	354, 394
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	4 cut(s)	133, 296, 356, 396
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	4 cut(s)	129, 292, 352, 392
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	147
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	4 cut(s)	133, 296, 356, 396
HinfI	GANTC	2 cut(s)	176, 329
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	110, 242
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	140, 216
Hpy8I	GTNNAC	2 cut(s)	110, 242
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	7 cut(s)	35, 80, 224, 277, 341, 352, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	133, 296, 356, 396
Kzo9I	GATC	3 cut(s)	82, 136, 362
LmnI	GCTCC	2 cut(s)	61, 160
LpnPI	CCDG	7 cut(s)	90, 156, 171, 201, 272, 329, 363
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	22, 22
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	244
MalI	GATC	3 cut(s)	84, 138, 364
MboI	GATC	3 cut(s)	82, 136, 362
MboII	GAAGA	2 cut(s)	56, 197
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	40, 52, 110, 112, 115
Mph1103I	ATGCAT	2 cut(s)	354, 394
MslI	CAYNNNNRTG	4 cut(s)	272, 297, 357, 391
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	3 cut(s)	82, 136, 362
NlaIII	CATG	4 cut(s)	133, 296, 356, 396
NsiI	ATGCAT	2 cut(s)	354, 394
PfeI	GAWTC	2 cut(s)	176, 329
PkrI	GCNGC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	4 cut(s)	272, 297, 357, 391
SacI	GAGCTC	1 cut(s)	66
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	82, 136, 362
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	66, 126, 175, 247, 257
SfaNI	GCATC	2 cut(s)	22, 22
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	4 cut(s)	272, 297, 357, 391
SnaBI	TACGTA	1 cut(s)	245
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	66
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	176, 329
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	57, 118
TspRI	CASTG	1 cut(s)	348
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	2 cut(s)	354, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.