Rh2BG429200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019825
Physical Location & Seq
Reverse (-)
60657212 .. 60660515
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG429200.1

Sequence Viewer

Length: 216 bp
ATGGTGATACACCTTTGTAGAAACTTGGAGAACAACAAGCTCACAGGCTCTATTCCGGAAGGACTAATTCGAAGAATGAATAGCGGTTTCTTGTCATTAAGTCACCGCGAAGCACAGACAAAGCCGATGCCGGACCTGGACGCCGTGGCAGCATCCAACCGGGAGAAGACGACGCATAGGCACATATGCCATTATCTGTCTCTATTTGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.04

Weight (kDa)

9.3

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019825)

Species Orthologous Gene IDs
pyrus_communis pycom09g11590
rosa_chinensis RchiOBHm_Chr2g0141381
rosa_roxburghii Rroxscaffold_2G00104020
rosa_samantha Rh2BG429200 Rh2CG405400 Rh2CG406500 Rh5CG282000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 84, 106
AcyI GRCGYC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 16, 95
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 204
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 137, 161
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 137, 161
BmsI GCATC 2 cut(s) 117, 161
BpiI GAAGAC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 56, 131, 160
BsmAI GTCTC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 55
BspACI CCGC 2 cut(s) 84, 106
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 159
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 2 cut(s) 149, 181
CviJI RGCY 3 cut(s) 40, 48, 124
CviKI_1 RGCY 3 cut(s) 40, 48, 124
Eco47I GGWCC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 135
FaiI YATR 3 cut(s) 177, 185, 187
FauNDI CATATG 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HapII CCGG 3 cut(s) 56, 131, 160
HgaI GACGC 2 cut(s) 149, 181
Hin1I GRCGYC 1 cut(s) 141
HpaII CCGG 3 cut(s) 56, 131, 160
HphI GGTGA 2 cut(s) 16, 95
Hpy188III TCNNGA 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 55
LpnPI CCDG 6 cut(s) 30, 69, 122, 144, 149, 173
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 2 cut(s) 117, 161
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 2 cut(s) 84, 178
MluCI AATT 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 180
MroI TCCGGA 1 cut(s) 55
MseI TTAA 2 cut(s) 98, 214
MspI CCGG 3 cut(s) 56, 131, 160
MspR9I CCNGG 2 cut(s) 137, 161
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 70
PkrI GCNGC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 98, 214
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 137, 161
SetI ASST 3 cut(s) 15, 42, 138
SfaNI GCATC 2 cut(s) 117, 161
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 133
Sse9I AATT 1 cut(s) 66
SsiI CCGC 2 cut(s) 84, 106
StyD4I CCNGG 2 cut(s) 135, 159
TaqI TCGA 1 cut(s) 70
TasI AATT 1 cut(s) 66
Tru1I TTAA 2 cut(s) 98, 214
Tru9I TTAA 2 cut(s) 98, 214
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.