Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0029212

Physical Location & Seq

Genomic Coordinates Forward (+)

65087675 .. 65088325

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG459900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGGTTCAAAAAACTAGCCACCAACTTCTTCACACCTGCTTGTTTCAAGGCCAAAAGCCAGACATCAGAACATAAATCCCAGTTATCATCCAAAGAGATCACTATTTCGCGTAGATTGTCACTTTCGGATGTGAGCAATTCATCAATCTGCACTGTCCTGAGTGACATATCAAATTCGCTTATCGGATCAAATCTTCATATCTTTGCCCACAATGAGCTCGAAAAGATCACTCAAAGCTTTTCTAAGAGCAATTATCTTGGAGAAGGCGGGTTCGGGAAAGTGTACAAAGGGTTTGTTGATGACAGGCTTAGGCCTGGCTTGGAAGCTCAACCTGTAGCTGTTAAGGTTTTGGATTTGGATGGCACGCAAGGTCATAGAGAGTGGCTGGCTGAAGTGGTTTTTCTTGGGCAATTGAAGCACCCTAATCTTGTGAACTTGATTGGGTACTGCTGTGAAGATGAACATAGGCTTCTCGTCTATGAATACATGGAGAGAGGCAACTTAGACAACAAACTATTCAAATGTAAGTATCATTCTTATTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

183

Amino Acids

20.78

Weight (kDa)

8.48

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 173	2.5e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 175	3.5e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029212)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g07320
rosa_samantha	Rh2BG459900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccII	CGCG	1 cut(s)	112
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	287, 449
AgsI	TTSAA	4 cut(s)	10, 49, 418, 523
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	4 cut(s)	220, 240, 329, 341
AluI	AGCT	4 cut(s)	220, 240, 329, 341
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	51, 314
ApoI	RAATTY	1 cut(s)	175
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	89, 136, 367
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	53, 316
BsiHKAI	GWGCWC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	53, 316
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	99, 188, 228
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	53, 316
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	99, 188, 228
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	368, 390
BstDEI	CTNAG	4 cut(s)	161, 246, 311, 505
BstF5I	GGATG	3 cut(s)	89, 136, 367
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	102, 191, 231
BstMBI	GATC	3 cut(s)	99, 188, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	53, 316
BtsCI	GGATG	3 cut(s)	89, 136, 367
BtsIMutI	CAGTG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	368, 390
Csp6I	GTAC	2 cut(s)	286, 448
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	2 cut(s)	286, 448
DdeI	CTNAG	4 cut(s)	161, 246, 311, 505
DpnI	GATC	3 cut(s)	101, 190, 230
DpnII	GATC	3 cut(s)	99, 188, 228
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	493
FaiI	YATR	7 cut(s)	75, 170, 201, 378, 468, 483, 491
FatI	CATG	1 cut(s)	489
FauI	CCCGC	1 cut(s)	263
FokI	GGATG	3 cut(s)	76, 143, 374
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	53, 316
Hin1II	CATG	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	286, 436
Hpy188I	TCNGA	4 cut(s)	70, 130, 188, 551
Hpy188III	TCNNGA	2 cut(s)	160, 277
Hpy8I	GTNNAC	2 cut(s)	286, 436
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	4 cut(s)	161, 246, 311, 505
Hsp92II	CATG	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	99, 188, 228
LpnPI	CCDG	9 cut(s)	51, 74, 95, 173, 292, 303, 330, 348, 374
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	120, 164
MalI	GATC	3 cut(s)	101, 190, 230
MboI	GATC	3 cut(s)	99, 188, 228
MboII	GAAGA	3 cut(s)	22, 188, 470
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	139, 175, 253, 413
MnlI	CCTC	1 cut(s)	491
MseI	TTAA	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeII	GATC	3 cut(s)	99, 188, 228
NlaIII	CATG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	120, 164
PaqCI	CACCTGC	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	287, 449
RsaNI	GTAC	2 cut(s)	286, 448
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	99, 188, 228
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	8, 40, 222, 242, 331, 337, 343, 351, 376
SfcI	CTRYAG	1 cut(s)	336
Sse9I	AATT	4 cut(s)	139, 175, 253, 413
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	139, 175, 253, 413
TatI	WGTACW	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	120, 164
Tsp45I	GTSAC	2 cut(s)	120, 164
TspDTI	ATGAA	4 cut(s)	132, 188, 477, 498
TspRI	CASTG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	175
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.