Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0026266

Physical Location & Seq

Genomic Coordinates Reverse (-)

83041371 .. 83041718

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG609000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAAAATGTTTCTGCGTTTATTAATGAAGATGAGCAGATGGAATTGCCTCCTGGATTCCGATTTCACCCGACAGATGAAGAACTCATAAGCCACTACCTTTCCCCGAAGGTTCTTGACAGTGGCTTCACCGCTAGAGCTATTGGGGAGGTGGATTTGAACAAGTGTGAGCCTTGGGATTTGCCTTGTAAGTCATCAAAAACAAAATCAATTTGTCTCTGTTTTCCTCTGTTTTCAATTTTAAAAATATGTATTTATTGTCATGTTTTCTCTGACTTTGTGTTCTGTGATTGTTCTATGAAGGGAGGGCTAAAATGGGTGAAAAGGAATGGTACTTTTTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

115

Amino Acids

13.08

Weight (kDa)

5.54

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 68	4.4e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0026266)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG597600 Rh2BG609000 Rh2DG620200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	160, 237
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	59, 121, 331
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	5 cut(s)	93, 126, 140, 172, 310
CviKI_1	RGCY	5 cut(s)	93, 126, 140, 172, 310
CviQI	GTAC	1 cut(s)	333
DraI	TTTAAA	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	266
FaiI	YATR	4 cut(s)	89, 250, 264, 299
FatI	CATG	1 cut(s)	262
FspBI	CTAG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	3 cut(s)	59, 121, 331
Hpy188I	TCNGA	2 cut(s)	62, 274
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	103, 295
HpyCH4III	ACNGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	266
LpnPI	CCDG	2 cut(s)	39, 66
MaeI	CTAG	1 cut(s)	135
MboII	GAAGA	2 cut(s)	41, 92
MluCI	AATT	3 cut(s)	44, 210, 237
MnlI	CCTC	4 cut(s)	60, 142, 237, 299
MseI	TTAA	2 cut(s)	24, 242
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
NlaIII	CATG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	24, 242
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	4 cut(s)	102, 114, 142, 153
Sse9I	AATT	3 cut(s)	44, 210, 237
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	3 cut(s)	44, 210, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	24, 242
Tru9I	TTAA	2 cut(s)	24, 242
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	42, 93, 314
TspRI	CASTG	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	24
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.