Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0033150

Physical Location & Seq

Genomic Coordinates Forward (+)

86987374 .. 86988959

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG652600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAGGAGAAGAACGACACCGGCGGGGGCGGTGCGTATGTGAGGGCGGACCAGATAGATCTGAAGAGCTTGGACGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAGCAACAAGAACAAGAAGCGGAAGCGGAAGCAGCAGCAGCTAGGGTGGTGGGGCCCACCAGGAGGCAAGAGTGGGAGATTGATCCTTCCAAGCTCATAGTCAAGGGTGCTATCGCCAGAGGAACCTTCGGCACCGTCCACCGTGGCATTTACGACGGCATAGACGTCGCCGTTAAACTTCTAGATCGGGGAGAAGAGGGCCATAGAACTGACGCTGAAATAGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTTCCCTGTCTTCACTCTCGGACAGTGCATGCTTTCATGCTACACTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

5.41

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033150)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG639200 Rh2BG652600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	5 cut(s)	24, 30, 47, 161, 167
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	68, 83
AcyI	GRCGYC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	69, 82, 182, 235, 365, 380
AluI	AGCT	6 cut(s)	69, 82, 182, 235, 365, 380
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	194, 340
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	5 cut(s)	79, 173, 176, 179, 377
AspS9I	GGNCC	4 cut(s)	49, 194, 195, 340
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BceAI	ACGGC	2 cut(s)	296, 313
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	183, 323
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	5 cut(s)	80, 174, 177, 180, 378
BlsI	GCNGC	5 cut(s)	81, 175, 178, 181, 379
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	49, 194, 195, 340
BmiI	GGNNCC	4 cut(s)	195, 196, 265, 274
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BshFI	GGCC	2 cut(s)	196, 342
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	196, 342
Bso31I	GGTCTC	1 cut(s)	126
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	58, 223, 325
BspACI	CCGC	5 cut(s)	24, 30, 47, 161, 167
BspANI	GGCC	2 cut(s)	196, 342
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	195, 196, 265, 274
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	58, 223, 325
BssNI	GRCGYC	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	277, 284, 419
Bst6I	CTCTTC	2 cut(s)	59, 330
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	95, 371
BstDSI	CCRYGG	1 cut(s)	283
BstKTI	GATC	3 cut(s)	61, 226, 328
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	58, 223, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 173, 179, 362
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	196, 342
BtgI	CCRYGG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	4 cut(s)	49, 194, 195, 340
CseI	GACGC	1 cut(s)	362
CviAII	CATG	3 cut(s)	105, 423, 431
CviJI	RGCY	8 cut(s)	69, 82, 182, 196, 235, 342, 365, 380
CviKI_1	RGCY	8 cut(s)	69, 82, 182, 196, 235, 342, 365, 380
DdeI	CTNAG	2 cut(s)	95, 371
DpnI	GATC	3 cut(s)	60, 225, 327
DpnII	GATC	3 cut(s)	58, 223, 325
Eam1104I	CTCTTC	2 cut(s)	59, 330
EarI	CTCTTC	2 cut(s)	59, 330
EciI	GGCGGA	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	68, 83
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	3 cut(s)	108, 426, 434
FaiI	YATR	8 cut(s)	39, 106, 113, 239, 302, 345, 424, 432
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FatI	CATG	3 cut(s)	104, 422, 430
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	80, 174, 177, 180, 378
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	5 cut(s)	80, 174, 177, 180, 378
FspBI	CTAG	2 cut(s)	183, 323
GluI	GCNGC	5 cut(s)	80, 174, 177, 180, 378
HaeIII	GGCC	2 cut(s)	196, 342
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	108, 426, 434
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	63, 87, 96, 415
Hpy188III	TCNNGA	2 cut(s)	323, 389
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	299, 311
HpyAV	CCTTC	2 cut(s)	237, 277
HpyCH4III	ACNGT	3 cut(s)	277, 284, 419
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 173, 179, 362
HpyF3I	CTNAG	2 cut(s)	95, 371
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	108, 426, 434
Kzo9I	GATC	3 cut(s)	58, 223, 325
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	34, 65, 85, 125, 149, 187, 214, 271, 413
Lsp1109I	GCAGC	5 cut(s)	91, 185, 188, 191, 389
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	183, 323
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	60, 225, 327
MboI	GATC	3 cut(s)	58, 223, 325
MboII	GAAGA	5 cut(s)	22, 76, 130, 347, 396
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	1 cut(s)	442
MnlI	CCTC	4 cut(s)	36, 198, 254, 331
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	4 cut(s)	88, 173, 179, 362
NdeII	GATC	3 cut(s)	58, 223, 325
NlaIII	CATG	3 cut(s)	108, 426, 434
NlaIV	GGNNCC	4 cut(s)	195, 196, 265, 274
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	81, 175, 178, 181, 379
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	195, 196, 265, 274
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	4 cut(s)	49, 194, 195, 340
PsuI	RGATCY	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	5 cut(s)	80, 174, 177, 180, 378
Sau3AI	GATC	3 cut(s)	58, 223, 325
Sau96I	GGNCC	4 cut(s)	49, 194, 195, 340
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	8 cut(s)	71, 84, 184, 237, 269, 309, 367, 382
SfaNI	GCATC	1 cut(s)	100
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	5 cut(s)	24, 30, 47, 161, 167
SspMI	CTAG	2 cut(s)	183, 323
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	277, 284, 419
TaiI	ACGT	1 cut(s)	309
TasI	AATT	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	5 cut(s)	79, 173, 176, 179, 377
TspDTI	ATGAA	2 cut(s)	17, 419
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	2 cut(s)	183, 323
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.