Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0026279

Physical Location & Seq

Genomic Coordinates Forward (+)

89060154 .. 89063036

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG681100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGCTATTGCCCCTGTTTCGGTTTGAGGAAGGGCAAGAAGCTCAAGCGCGGCAAAGACGACGACGTTCACAAAACCACAATCAACGACAACAAAAACCCTTCTTCCGATAATGCAACGCCTCAATTGTCTTCTGCTCAAGAAGATGGAACTAATGATCCTACTAAGGCACAGACATTCACCTTTCGTGAACTTGCAACTGCAACCAAAAATTTTAGGGCGGAATGCTTTATTGGGGAAGGTGGATTTGGGCCTGTTTACAAAGGGAAATTAAGTTCTGGTCGAGCACGTCCTTTTATGAAAGATCCCAAGAAGCTTACCATGCAATTTGCAGATCCATATCTTAGAGGGCAGTTTCCAGTACATATCTTGAGAAACGCATTAGAAGTGGCTTCCATGTGTCTAAGAGAGGATGCTTCTGCCCGACCGACCATGAGGGATGTGGTACTTGCCTTGAATTACTTGACAACCCATCCATATAATGAACCAAAGGTGTTGAGCATCAGCACTGAGCGGGTTGAAGGAATAAAGAGTTTGAATGCTTCAGGGAATAACTCTCCTAATGAAACGACATGTATGTTAAACAAGAACTTGGACAGAGAAAAAGCTGTTGCAGAGGCCAAGATGTGGGGAGAGACTTGGAGAGACAAACGTGGTGCACAAAATAGTCGTCATGATGCCTTTAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0040007 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

9.34

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026279)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG681100 Rh2CG644000 Rh2DG694800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	514
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	51, 221, 514
AclWI	GGATC	3 cut(s)	152, 299, 329
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	363, 447
AfiI	CCNNNNNNNGG	2 cut(s)	20, 627
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	457, 521, 538
AjiI	CACGTC	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 231, 248, 263
AloI	GAACNNNNNNTCC	4 cut(s)	142, 174, 259, 291
AluBI	AGCT	3 cut(s)	43, 316, 608
AluI	AGCT	3 cut(s)	43, 316, 608
Alw21I	GWGCWC	2 cut(s)	289, 661
Alw26I	GTCTC	2 cut(s)	629, 639
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	3 cut(s)	152, 299, 329
AoxI	GGCC	2 cut(s)	251, 618
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	289, 661
BccI	CCATC	2 cut(s)	140, 480
BcoDI	GTCTC	2 cut(s)	629, 639
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	251
BmsI	GCATC	3 cut(s)	403, 510, 667
BpiI	GAAGAC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	29, 123, 391
BsaBI	GATNNNNATC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 627
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	339
BseGI	GGATG	3 cut(s)	418, 445, 472
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	20, 627
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	253, 620
BsiEI	CGRYCG	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	289, 661
BslI	CCNNNNNNNGG	2 cut(s)	20, 627
BsmAI	GTCTC	2 cut(s)	629, 639
BsmI	GAATGC	2 cut(s)	230, 544
BsnI	GGCC	2 cut(s)	253, 620
Bsp1286I	GDGCHC	2 cut(s)	289, 661
Bsp143I	GATC	3 cut(s)	157, 304, 334
BspACI	CCGC	3 cut(s)	51, 221, 514
BspANI	GGCC	2 cut(s)	253, 620
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	673
BspPI	GGATC	3 cut(s)	152, 299, 329
BsrBI	CCGCTC	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	3 cut(s)	157, 304, 334
BstDEI	CTNAG	4 cut(s)	165, 344, 404, 510
BstF5I	GGATG	3 cut(s)	418, 445, 472
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	160, 307, 337
BstMAI	GTCTC	2 cut(s)	629, 639
BstMBI	GATC	3 cut(s)	157, 304, 334
BstMCI	CGRYCG	1 cut(s)	428
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	304, 334
BstYI	RGATCY	2 cut(s)	304, 334
BsuRI	GGCC	2 cut(s)	253, 620
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	418, 445, 472
BtsIMutI	CAGTG	1 cut(s)	507
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	362, 446
CviAII	CATG	5 cut(s)	322, 397, 433, 573, 674
CviJI	RGCY	7 cut(s)	6, 43, 253, 316, 392, 608, 620
CviKI_1	RGCY	7 cut(s)	6, 43, 253, 316, 392, 608, 620
CviQI	GTAC	2 cut(s)	362, 446
DdeI	CTNAG	4 cut(s)	165, 344, 404, 510
DpnI	GATC	3 cut(s)	159, 306, 336
DpnII	GATC	3 cut(s)	157, 304, 334
EciI	GGCGGA	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	528
FaeI	CATG	5 cut(s)	325, 400, 436, 576, 677
FatI	CATG	5 cut(s)	321, 396, 432, 572, 673
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	3 cut(s)	425, 452, 459
Fsp4HI	GCNGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	253, 620
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	325, 400, 436, 576, 677
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	314
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	4 cut(s)	70, 191, 259, 659
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	4 cut(s)	140, 188, 370, 674
Hpy8I	GTNNAC	4 cut(s)	70, 191, 259, 659
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	4 cut(s)	25, 111, 233, 515
HpyCH4IV	ACGT	3 cut(s)	66, 289, 652
HpyCH4V	TGCA	7 cut(s)	116, 197, 203, 325, 332, 614, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	4 cut(s)	165, 344, 404, 510
HpySE526I	ACGT	3 cut(s)	66, 289, 652
Hsp92II	CATG	5 cut(s)	325, 400, 436, 576, 677
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	157, 304, 334
LpnPI	CCDG	5 cut(s)	28, 264, 267, 372, 531
LweI	GCATC	3 cut(s)	403, 510, 667
MaeII	ACGT	3 cut(s)	66, 289, 652
MalI	GATC	3 cut(s)	159, 306, 336
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	3 cut(s)	157, 304, 334
MboII	GAAGA	3 cut(s)	96, 123, 155
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	2 cut(s)	304, 334
MhlI	GDGCHC	2 cut(s)	289, 661
MluCI	AATT	5 cut(s)	125, 211, 269, 326, 457
MnlI	CCTC	6 cut(s)	21, 132, 341, 403, 429, 610
MseI	TTAA	2 cut(s)	272, 581
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	2 cut(s)	230, 544
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	3 cut(s)	157, 304, 334
NlaIII	CATG	5 cut(s)	325, 400, 436, 576, 677
NspI	RCATGY	1 cut(s)	576
PagI	TCATGA	1 cut(s)	673
PciI	ACATGT	1 cut(s)	572
PctI	GAATGC	2 cut(s)	230, 544
PflMI	CCANNNNNTGG	1 cut(s)	627
PkrI	GCNGC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	304, 334
RsaI	GTAC	2 cut(s)	363, 447
RsaNI	GTAC	2 cut(s)	362, 446
SaqAI	TTAA	2 cut(s)	272, 581
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	157, 304, 334
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	289, 661
SetI	ASST	9 cut(s)	45, 69, 185, 244, 292, 318, 495, 610, 655
SfaNI	GCATC	3 cut(s)	403, 510, 667
SmlI	CTYRAG	3 cut(s)	44, 138, 370
SmoI	CTYRAG	3 cut(s)	44, 138, 370
Sse9I	AATT	5 cut(s)	125, 211, 269, 326, 457
SsiI	CCGC	3 cut(s)	51, 221, 514
TaiI	ACGT	3 cut(s)	69, 292, 655
TaqI	TCGA	1 cut(s)	283
TaqII	GACCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	125, 211, 269, 326, 457
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	272, 581
Tru9I	TTAA	2 cut(s)	272, 581
TscAI	CASTG	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	314, 498, 579
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	627
VneI	GTGCAC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.