Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0025701

Physical Location & Seq

Genomic Coordinates Reverse (-)

89163856 .. 89167558

Gene Structure 3703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG683000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTATACTCAACTTTGTCCGCCGTTTGTTCTACATAGGTTTCTTAGGGAGCTGGATCTGCAGGAAAATGAAATTGATGATCATAGAGGCCATTGGCTTAGCTGCTTTCCTGATAGCTGTACCTCTCTTGTATCCCTTAATTTTGCATGCCTGAAAGGAGAAATTAATCTAGCTGCTCTTGTGAGACTTGTGGCTAGATCTCCGAACCTCAAAGTCCTGAGGGTTAACCGTGCTGTCCCTCCTGACACCCTCCAAAAAGTATTGATGCAAGCACCTCAACTCGTTGATTTGGGCACTGGGTCTTATGTCCTAGATCCTGACTCTGAATCCTACAGCAAACTGAAGGCTACGATTCTTAAATGTAAATCAATCAAGAGCTTGTCAGGGTTTTTAGAGGTTGCTCCTCGTTCTCTCCCAGCCTTTTACCCTATATGCTTGACCCTGACATCCTTGAACCTTAGCTACGCACCTGGAGTTCATGGTAGTGATCTCATAAAGTTAATTCGCCAGTGTGGGAGGCTTCAGCGTTTATGGATACTGGATTGTATCGGAGACAAAGGACTAGCAGTTGTAGCATCAACTTGTAAAGAATTGCAGGAATTGAGAGTTTTTCCCTCTGATCCATTTGGAGTTGGGCATGCCGCTGTAACAGAAGAAGGCCTTGTTGCCATATCTGCTGGCTGCCCAAAGCTTCATTCATTGCTTTACTTCTGCCAGCAGATGACCAATGCTGCTCTCATAACTGTTGCCAAGAACTGCCCTAATTTCATAAGGTTCAGGTTGTGCATCCTTGATCCCACAAAACCTGACCCTGTCACTATGCAGCCACTAGATGAAGGTTTTGGGGCAATTGTTCAGGCGTGCAAAAAGCTTAGGCGGTTGTCAATGTCTGGCCTTTTGACCGACCAAGTTTTCCTCTACATTGGGATGTATGCTGAGCAGCTTGAAATGCTTTCTATTGCATTTGCTGGGGACAGCGACAAAGGTATGCTTTATGTGTTGAACGGATGCAAGAAGATGAGGAAGCTTGAGATTAGGGACAGCCCCTTCGGTGATGGGGCACTTCTGAAGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTTACCCTTGGAGGCTGCAAGACTCTTGCAATGAACATGCCGGGCCTTAATGTGGAGATCATAAATGAAAATGATCAGATGGAATTTATTATTGATGATGAGCAAAAGGTGGAGAAGATGTACGTCTACCGCACATTAGTAGGGCCGAGGGAGGATAAGCCAGAGTTTGTGTGGACTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0007154 GO:0007165 GO:0007275 GO:0008144 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010011 GO:0010033 GO:0010035 GO:0010152 GO:0010167 GO:0016020 GO:0019005 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031090 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071310 GO:0071365 GO:0071495 GO:0080022 GO:0090567 GO:0090696 GO:0098588 GO:0098805 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

434

Amino Acids

48.38

Weight (kDa)

6.61

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025701)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8466117.1_g000001
rosa_samantha	Rh2AG671500 Rh2BG683000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 1248
AciI	CCGC	4 cut(s)	20, 642, 877, 1252
AclWI	GGATC	5 cut(s)	63, 308, 614, 788, 1092
AcsI	RAATTY	1 cut(s)	1205
AcuI	CTGAAG	3 cut(s)	362, 506, 1088
AfaI	GTAC	2 cut(s)	121, 1244
AfiI	CCNNNNNNNGG	1 cut(s)	1174
AgsI	TTSAA	3 cut(s)	454, 947, 1003
AjiI	CACGTC	1 cut(s)	1075
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	4 cut(s)	679, 711, 1113, 1145
Alw26I	GTCTC	2 cut(s)	178, 546
AlwI	GGATC	5 cut(s)	63, 308, 614, 788, 1092
AoxI	GGCC	5 cut(s)	88, 658, 892, 1165, 1265
ApeKI	GCWGC	7 cut(s)	102, 173, 681, 731, 823, 940, 1137
ApoI	RAATTY	1 cut(s)	1205
ArsI	GACNNNNNNTTYG	2 cut(s)	1031, 1063
AseI	ATTAAT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	1165, 1265
AsuC2I	CCSGG	1 cut(s)	1164
AsuHPI	GGTGA	1 cut(s)	1064
AxyI	CCTNAGG	1 cut(s)	218
BaeGI	GKGCMC	2 cut(s)	296, 1063
BbvI	GCAGC	7 cut(s)	89, 160, 668, 718, 835, 952, 1124
BccI	CCATC	2 cut(s)	1049, 1195
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	2 cut(s)	142, 528
BclI	TGATCA	2 cut(s)	79, 1195
BcnI	CCSGG	1 cut(s)	1164
BcoDI	GTCTC	2 cut(s)	178, 546
BfaI	CTAG	5 cut(s)	170, 195, 311, 563, 830
BfmI	CTRYAG	3 cut(s)	59, 331, 1301
BfuI	GTATCC	2 cut(s)	142, 528
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	8 cut(s)	103, 174, 642, 682, 732, 824, 941, 1138
BlpI	GCTNAGC	2 cut(s)	98, 936
BlsI	GCNGC	8 cut(s)	104, 175, 643, 683, 733, 825, 942, 1139
Bme1390I	CCNGG	2 cut(s)	471, 1164
BmgBI	CACGTC	1 cut(s)	1075
BmgT120I	GGNCC	2 cut(s)	1165, 1265
BmrFI	CCNGG	2 cut(s)	471, 1164
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	4 cut(s)	255, 584, 795, 998
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	2 cut(s)	458, 872
Bpu1102I	GCTNAGC	2 cut(s)	98, 936
BpuEI	CTTGAG	1 cut(s)	1049
BpuMI	CCSGG	1 cut(s)	1164
BsaJI	CCNNGG	2 cut(s)	1129, 1268
BsaXI	ACNNNNNCTCC	2 cut(s)	1226, 1256
Bsc4I	CCNNNNNNNGG	1 cut(s)	1174
Bse1I	ACTGG	3 cut(s)	301, 508, 543
Bse21I	CCTNAGG	1 cut(s)	218
Bse3DI	GCAATG	2 cut(s)	698, 1158
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	1129, 1268
BseGI	GGATG	5 cut(s)	446, 786, 933, 1013, 1113
BseLI	CCNNNNNNNGG	1 cut(s)	1174
BseMI	GCAATG	2 cut(s)	698, 1158
BseMII	CTCAG	2 cut(s)	209, 927
BseNI	ACTGG	3 cut(s)	301, 508, 543
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	2 cut(s)	296, 1063
BseXI	GCAGC	7 cut(s)	89, 160, 668, 718, 835, 952, 1124
BseYI	CCCAGC	2 cut(s)	415, 968
BshFI	GGCC	5 cut(s)	90, 660, 894, 1167, 1267
BsiSI	CCGG	1 cut(s)	1163
BslFI	GGGAC	3 cut(s)	221, 986, 1052
BslI	CCNNNNNNNGG	1 cut(s)	1174
BsmAI	GTCTC	2 cut(s)	178, 546
BsmFI	GGGAC	3 cut(s)	221, 986, 1052
BsnI	GGCC	5 cut(s)	90, 660, 894, 1167, 1267
Bsp1286I	GDGCHC	2 cut(s)	296, 1063
Bsp1720I	GCTNAGC	2 cut(s)	98, 936
BspACI	CCGC	4 cut(s)	20, 642, 877, 1252
BspANI	GGCC	5 cut(s)	90, 660, 894, 1167, 1267
BspCNI	CTCAG	2 cut(s)	210, 928
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	5 cut(s)	63, 308, 614, 788, 1092
BsrDI	GCAATG	2 cut(s)	698, 1158
BsrI	ACTGG	3 cut(s)	301, 508, 543
BssECI	CCNNGG	2 cut(s)	1129, 1268
BssNAI	GTATAC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	1129
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	230, 745
BstC8I	GCNNGC	6 cut(s)	148, 270, 639, 679, 716, 862
BstDEI	CTNAG	6 cut(s)	44, 98, 218, 458, 872, 936
BstF5I	GGATG	5 cut(s)	446, 786, 933, 1013, 1113
BstMAI	GTCTC	2 cut(s)	178, 546
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 572, 674, 949
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	3 cut(s)	150, 641, 1162
BstSCI	CCNGG	2 cut(s)	469, 1162
BstSFI	CTRYAG	3 cut(s)	59, 331, 1301
BstSLI	GKGCMC	2 cut(s)	296, 1063
BstV1I	GCAGC	7 cut(s)	89, 160, 668, 718, 835, 952, 1124
BstX2I	RGATCY	3 cut(s)	55, 197, 313
BstYI	RGATCY	3 cut(s)	55, 197, 313
BstZ17I	GTATAC	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	218
BsuI	GTATCC	2 cut(s)	142, 528
BsuRI	GGCC	5 cut(s)	90, 660, 894, 1167, 1267
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	5 cut(s)	446, 786, 933, 1013, 1113
BtsIMutI	CAGTG	2 cut(s)	294, 515
Cac8I	GCNNGC	6 cut(s)	148, 270, 639, 679, 716, 862
Cfr13I	GGNCC	2 cut(s)	1165, 1265
Csp6I	GTAC	2 cut(s)	120, 1243
CviAII	CATG	4 cut(s)	147, 479, 638, 1159
CviQI	GTAC	2 cut(s)	120, 1243
DdeI	CTNAG	6 cut(s)	44, 98, 218, 458, 872, 936
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	1129
Eco147I	AGGCCT	1 cut(s)	660
Eco57I	CTGAAG	3 cut(s)	362, 506, 1088
Eco81I	CCTNAGG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	1129
ErhI	CCWWGG	1 cut(s)	1129
FaeI	CATG	4 cut(s)	150, 482, 641, 1162
FalI	AAGNNNNNCTT	6 cut(s)	645, 677, 975, 1007, 1113, 1145
FaqI	GGGAC	3 cut(s)	221, 986, 1052
FatI	CATG	4 cut(s)	146, 478, 637, 1158
FbaI	TGATCA	2 cut(s)	79, 1195
FblI	GTMKAC	2 cut(s)	5, 1248
Fnu4HI	GCNGC	8 cut(s)	103, 174, 642, 682, 732, 824, 941, 1138
FokI	GGATG	5 cut(s)	433, 773, 940, 1020, 1120
Fsp4HI	GCNGC	8 cut(s)	103, 174, 642, 682, 732, 824, 941, 1138
FspBI	CTAG	5 cut(s)	170, 195, 311, 563, 830
GluI	GCNGC	8 cut(s)	103, 174, 642, 682, 732, 824, 941, 1138
GsaI	CCCAGC	2 cut(s)	419, 972
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	5 cut(s)	90, 660, 894, 1167, 1267
HapII	CCGG	1 cut(s)	1163
Hin1II	CATG	4 cut(s)	150, 482, 641, 1162
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	3 cut(s)	689, 869, 1025
HinfI	GANTC	5 cut(s)	320, 326, 352, 1144, 1297
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	1163
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	4 cut(s)	6, 226, 1249, 1296
Hpy188I	TCNGA	6 cut(s)	204, 325, 551, 619, 1068, 1200
Hpy188III	TCNNGA	5 cut(s)	110, 217, 242, 317, 373
Hpy8I	GTNNAC	4 cut(s)	6, 226, 1249, 1296
HpyAV	CCTTC	5 cut(s)	337, 650, 830, 1057, 1063
HpyCH4III	ACNGT	2 cut(s)	230, 745
HpyCH4IV	ACGT	2 cut(s)	1074, 1245
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 572, 674, 949
HpyF3I	CTNAG	6 cut(s)	44, 98, 218, 458, 872, 936
HpySE526I	ACGT	2 cut(s)	1074, 1245
Hsp92II	CATG	4 cut(s)	150, 482, 641, 1162
Ksp22I	TGATCA	2 cut(s)	79, 1195
KspAI	GTTAAC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	49, 406
Lsp1109I	GCAGC	7 cut(s)	89, 160, 668, 718, 835, 952, 1124
LweI	GCATC	4 cut(s)	255, 584, 795, 998
MaeI	CTAG	5 cut(s)	170, 195, 311, 563, 830
MaeII	ACGT	2 cut(s)	1074, 1245
MaeIII	GTNAC	3 cut(s)	646, 814, 1123
MboII	GAAGA	3 cut(s)	665, 1027, 1249
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	3 cut(s)	55, 197, 313
MhlI	GDGCHC	2 cut(s)	296, 1063
MluCI	AATT	9 cut(s)	72, 139, 162, 501, 590, 599, 763, 849, 1205
MlyI	GAGTC	3 cut(s)	314, 1138, 1291
MseI	TTAA	6 cut(s)	138, 165, 225, 357, 500, 1170
MslI	CAYNNNNRTG	2 cut(s)	483, 926
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	1 cut(s)	1163
MspR9I	CCNGG	2 cut(s)	471, 1164
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	58, 572, 674, 949
NciI	CCSGG	1 cut(s)	1164
NlaIII	CATG	4 cut(s)	150, 482, 641, 1162
NmeAIII	GCCGAG	1 cut(s)	1293
NmuCI	GTSAC	1 cut(s)	814
NspI	RCATGY	3 cut(s)	150, 641, 1162
PaeI	GCATGC	2 cut(s)	150, 641
PceI	AGGCCT	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	326, 352
PflFI	GACNNNGTC	1 cut(s)	812
PkrI	GCNGC	8 cut(s)	104, 175, 643, 683, 733, 825, 942, 1139
PleI	GAGTC	3 cut(s)	314, 1138, 1291
PpsI	GAGTC	3 cut(s)	314, 1138, 1291
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	2 cut(s)	415, 968
PspGI	CCWGG	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	1165, 1265
PsrI	GAACNNNNNNTAC	2 cut(s)	446, 478
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	55, 197, 313
PsyI	GACNNNGTC	1 cut(s)	812
RsaI	GTAC	2 cut(s)	121, 1244
RsaNI	GTAC	2 cut(s)	120, 1243
RseI	CAYNNNNRTG	2 cut(s)	483, 926
SaqAI	TTAA	6 cut(s)	138, 165, 225, 357, 500, 1170
SatI	GCNGC	8 cut(s)	103, 174, 642, 682, 732, 824, 941, 1138
Sau96I	GGNCC	2 cut(s)	1165, 1265
SchI	GAGTC	3 cut(s)	314, 1138, 1291
ScrFI	CCNGG	2 cut(s)	471, 1164
SduI	GDGCHC	2 cut(s)	296, 1063
SfaNI	GCATC	4 cut(s)	255, 584, 795, 998
SfcI	CTRYAG	3 cut(s)	59, 331, 1301
SmiMI	CAYNNNNRTG	2 cut(s)	483, 926
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SphI	GCATGC	2 cut(s)	150, 641
Sse9I	AATT	9 cut(s)	72, 139, 162, 501, 590, 599, 763, 849, 1205
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	4 cut(s)	20, 642, 877, 1252
SspMI	CTAG	5 cut(s)	170, 195, 311, 563, 830
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	469, 1162
StyI	CCWWGG	1 cut(s)	1129
TaaI	ACNGT	2 cut(s)	230, 745
TaiI	ACGT	2 cut(s)	1077, 1248
TaqII	GACCGA	1 cut(s)	917
TasI	AATT	9 cut(s)	72, 139, 162, 501, 590, 599, 763, 849, 1205
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	326, 352
Tru1I	TTAA	6 cut(s)	138, 165, 225, 357, 500, 1170
Tru9I	TTAA	6 cut(s)	138, 165, 225, 357, 500, 1170
TscAI	CASTG	2 cut(s)	301, 515
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	7 cut(s)	102, 173, 681, 731, 823, 940, 1137
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	9 cut(s)	84, 467, 683, 687, 757, 849, 1101, 1169, 1203
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	2 cut(s)	301, 515
Tth111I	GACNNNGTC	1 cut(s)	812
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	1205
XceI	RCATGY	3 cut(s)	150, 641, 1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1290
XmiI	GTMKAC	2 cut(s)	5, 1248
XspI	CTAG	5 cut(s)	170, 195, 311, 563, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.