DYAD-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0100881 |
| rosa_samantha | Rh2CG147400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 181 |
| AluBI | AGCT | 3 cut(s) | 112, 240, 314 |
| AluI | AGCT | 3 cut(s) | 112, 240, 314 |
| Alw26I | GTCTC | 2 cut(s) | 53, 177 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AsuII | TTCGAA | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 71, 248 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 289 |
| BcoDI | GTCTC | 2 cut(s) | 53, 177 |
| BfaI | CTAG | 2 cut(s) | 98, 251 |
| Bpu14I | TTCGAA | 1 cut(s) | 107 |
| BpuEI | CTTGAG | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 53 |
| BseGI | GGATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 2 cut(s) | 141, 306 |
| Bsh1285I | CGRYCG | 1 cut(s) | 306 |
| BsiEI | CGRYCG | 1 cut(s) | 306 |
| BsmAI | GTCTC | 2 cut(s) | 53, 177 |
| Bso31I | GGTCTC | 1 cut(s) | 53 |
| Bsp119I | TTCGAA | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 86 |
| Bsp143I | GATC | 1 cut(s) | 303 |
| BspCNI | CTCAG | 2 cut(s) | 140, 307 |
| BspT104I | TTCGAA | 1 cut(s) | 107 |
| BspTNI | GGTCTC | 1 cut(s) | 53 |
| BssMI | GATC | 1 cut(s) | 303 |
| BstBI | TTCGAA | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 2 cut(s) | 127, 315 |
| BstF5I | GGATG | 1 cut(s) | 72 |
| BstKTI | GATC | 1 cut(s) | 306 |
| BstMAI | GTCTC | 2 cut(s) | 53, 177 |
| BstMBI | GATC | 1 cut(s) | 303 |
| BstMCI | CGRYCG | 1 cut(s) | 306 |
| BstNSI | RCATGY | 1 cut(s) | 10 |
| BtgZI | GCGATG | 1 cut(s) | 279 |
| BtsCI | GGATG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CviAII | CATG | 2 cut(s) | 7, 157 |
| CviJI | RGCY | 6 cut(s) | 84, 112, 204, 240, 258, 314 |
| CviKI_1 | RGCY | 6 cut(s) | 84, 112, 204, 240, 258, 314 |
| DdeI | CTNAG | 2 cut(s) | 127, 315 |
| DpnI | GATC | 1 cut(s) | 305 |
| DpnII | GATC | 1 cut(s) | 303 |
| Eco24I | GRGCYC | 1 cut(s) | 86 |
| Eco31I | GGTCTC | 1 cut(s) | 53 |
| EcoT38I | GRGCYC | 1 cut(s) | 86 |
| FaeI | CATG | 2 cut(s) | 10, 160 |
| FaiI | YATR | 5 cut(s) | 8, 93, 158, 225, 227 |
| FatI | CATG | 2 cut(s) | 6, 156 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| FokI | GGATG | 1 cut(s) | 59 |
| FriOI | GRGCYC | 1 cut(s) | 86 |
| FspBI | CTAG | 2 cut(s) | 98, 251 |
| Hin1II | CATG | 2 cut(s) | 10, 160 |
| HindIII | AAGCTT | 1 cut(s) | 110 |
| HinfI | GANTC | 1 cut(s) | 145 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 130 |
| Hpy188III | TCNNGA | 1 cut(s) | 22 |
| Hpy99I | CGWCG | 1 cut(s) | 304 |
| HpyAV | CCTTC | 2 cut(s) | 215, 277 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 127, 315 |
| Hsp92II | CATG | 2 cut(s) | 10, 160 |
| Kzo9I | GATC | 1 cut(s) | 303 |
| MaeI | CTAG | 2 cut(s) | 98, 251 |
| MalI | GATC | 1 cut(s) | 305 |
| MboI | GATC | 1 cut(s) | 303 |
| MboII | GAAGA | 2 cut(s) | 143, 254 |
| MhlI | GDGCHC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 1 cut(s) | 143 |
| MnlI | CCTC | 4 cut(s) | 126, 136, 186, 226 |
| MslI | CAYNNNNRTG | 2 cut(s) | 77, 228 |
| MspA1I | CMGCKG | 1 cut(s) | 314 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 1 cut(s) | 303 |
| NlaIII | CATG | 2 cut(s) | 10, 160 |
| NspI | RCATGY | 1 cut(s) | 10 |
| NspV | TTCGAA | 1 cut(s) | 107 |
| PfeI | GAWTC | 1 cut(s) | 145 |
| Ple19I | CGATCG | 1 cut(s) | 306 |
| PvuI | CGATCG | 1 cut(s) | 306 |
| PvuII | CAGCTG | 1 cut(s) | 314 |
| RseI | CAYNNNNRTG | 2 cut(s) | 77, 228 |
| Sau3AI | GATC | 1 cut(s) | 303 |
| SduI | GDGCHC | 1 cut(s) | 86 |
| SetI | ASST | 7 cut(s) | 114, 128, 186, 197, 242, 252, 316 |
| SfuI | TTCGAA | 1 cut(s) | 107 |
| SgeI | CNNG | 9 cut(s) | 19, 34, 89, 110, 161, 169, 193, 213, 263 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 77, 228 |
| SmlI | CTYRAG | 1 cut(s) | 20 |
| SmoI | CTYRAG | 1 cut(s) | 20 |
| SspMI | CTAG | 2 cut(s) | 98, 251 |
| TaqI | TCGA | 4 cut(s) | 66, 107, 143, 284 |
| TfiI | GAWTC | 1 cut(s) | 145 |
| TscAI | CASTG | 1 cut(s) | 195 |
| TspDTI | ATGAA | 4 cut(s) | 108, 152, 180, 242 |
| TspRI | CASTG | 1 cut(s) | 195 |
| XceI | RCATGY | 1 cut(s) | 10 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 251 |
| XspI | CTAG | 2 cut(s) | 98, 251 |