Rh2CG162300

Hsp90 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0029096
Physical Location & Seq
Forward (+)
14343632 .. 14348288
4657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG162300.1

Sequence Viewer

Length: 426 bp
ATGACTAAGGTGGAACTCATTGACTTCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGTCCTCTGATATCAGAATGAGAGGAATCAAAGAGAACTCAATCCTCTCTTTCAATATTGCTGCACAATTCCCAATTGATTTTGTTGATTTCGACGTTCAGGCGCGTCGGCCAAGATCAAATCGGGATCATCGTTGGGTTGCCGGAGACTTGGATGAAGCCTCGGTCGCCGCCGGGCCGCAGAAGTTTTCAATCTTCGATTTCGAAAGCCTTTGGAGACGTTTCAATAGTCATATGGTACTTGACATTAGCAAAATTACTTATACCACTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90 Hydrolase_4

Protein Analysis

141

Amino Acids

16.33

Weight (kDa)

8.89

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029096)

Species Orthologous Gene IDs
prunus_persica Prupe.7G020100_v2.0.a1
rosa_samantha Rh2CG162300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 1 cut(s) 256
AciI CCGC 2 cut(s) 321, 329
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 3 cut(s) 34, 52, 390
AgsI TTSAA 4 cut(s) 57, 205, 342, 376
AhlI ACTAGT 1 cut(s) 419
Alw26I GTCTC 2 cut(s) 291, 361
AlwI GGATC 1 cut(s) 285
AoxI GGCC 2 cut(s) 260, 326
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 153, 326
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 92
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 291, 361
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 1 cut(s) 420
BisI GCNGC 3 cut(s) 213, 321, 329
BlsI GCNGC 3 cut(s) 214, 322, 330
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 153, 326
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 28, 312
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 28, 312
BseGI GGATG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 56, 96
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 262, 328
BshNI GGYRCC 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 294, 324
BsmAI GTCTC 2 cut(s) 291, 361
BsmBI CGTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 262, 328
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 2 cut(s) 266, 277
BspACI CCGC 2 cut(s) 321, 329
BspANI GGCC 2 cut(s) 262, 328
BspCNI CTCAG 2 cut(s) 55, 97
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 28, 312
BssMI GATC 2 cut(s) 266, 277
BssT1I CCWWGG 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 6, 42, 105
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 269, 280
BstMAI GTCTC 2 cut(s) 291, 361
BstMBI GATC 2 cut(s) 266, 277
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 323
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 262, 328
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 153, 326
CseI GACGC 1 cut(s) 245
Csp6I GTAC 3 cut(s) 33, 51, 389
CviJI RGCY 7 cut(s) 71, 131, 145, 262, 311, 328, 360
CviKI_1 RGCY 7 cut(s) 71, 131, 145, 262, 311, 328, 360
CviQI GTAC 3 cut(s) 33, 51, 389
DdeI CTNAG 3 cut(s) 6, 42, 105
DpnI GATC 2 cut(s) 268, 279
DpnII GATC 2 cut(s) 266, 277
EaeI YGGCCR 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 361
FaiI YATR 6 cut(s) 101, 149, 151, 384, 386, 414
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 213, 321, 329
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 213, 321, 329
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 255
GluI GCNGC 3 cut(s) 213, 321, 329
HaeIII GGCC 2 cut(s) 262, 328
HapII CCGG 2 cut(s) 294, 324
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 1 cut(s) 177
HpaII CCGG 2 cut(s) 294, 324
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 4 cut(s) 45, 75, 160, 167
Hpy188III TCNNGA 1 cut(s) 275
Hpy99I CGWCG 2 cut(s) 248, 261
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 2 cut(s) 246, 370
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 6, 42, 105
HpySE526I ACGT 2 cut(s) 246, 370
HspAI GCGC 1 cut(s) 254
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 266, 277
LpnPI CCDG 3 cut(s) 236, 307, 337
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 246, 370
MalI GATC 2 cut(s) 268, 279
MboI GATC 2 cut(s) 266, 277
MboII GAAGA 3 cut(s) 97, 106, 337
MfeI CAATTG 1 cut(s) 225
MluCI AATT 5 cut(s) 59, 125, 218, 225, 405
MnlI CCTC 4 cut(s) 166, 167, 206, 322
MspI CCGG 2 cut(s) 294, 324
MspR9I CCNGG 1 cut(s) 325
MunI CAATTG 1 cut(s) 225
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 325
NdeI CATATG 1 cut(s) 384
NdeII GATC 2 cut(s) 266, 277
NlaIV GGNNCC 1 cut(s) 34
NspV TTCGAA 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 214, 322, 330
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 153, 326
RsaI GTAC 3 cut(s) 34, 52, 390
RsaNI GTAC 3 cut(s) 33, 51, 389
SatI GCNGC 3 cut(s) 213, 321, 329
Sau3AI GATC 2 cut(s) 266, 277
Sau96I GGNCC 2 cut(s) 153, 326
ScrFI CCNGG 1 cut(s) 325
SetI ASST 3 cut(s) 12, 249, 373
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 153
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 5 cut(s) 59, 125, 218, 225, 405
SsiI CCGC 2 cut(s) 321, 329
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 28
TaiI ACGT 2 cut(s) 249, 373
TaqI TCGA 3 cut(s) 243, 348, 354
TaqII GACCGA 1 cut(s) 304
TasI AATT 5 cut(s) 59, 125, 218, 225, 405
TauI GCSGC 2 cut(s) 323, 331
TfiI GAWTC 1 cut(s) 177
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 150, 321
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 59
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.