Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0030082

Physical Location & Seq

Genomic Coordinates Reverse (-)

23280616 .. 23281090

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGAACCTCTTACCAACTCTTTGCCGAAATACTTGCCGGGGTTCTATGTGGAGGACTTGTTTGTGAGGGAGTGCTACAGGAGGAAGAGCTAGGGAAAATGCTGCTTTCGGCGGTGGCGAAGCAGGCGGTGAAGATGGGCAACGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAAGTTTTATGAGGAAATGGGGGCCAAGATTATGCAGGAGTGGAGGATTTGCAGGCTCACTGGGGATGCTCTTCAGGCTTATCATGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

93

Amino Acids

10.31

Weight (kDa)

4.84

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030082)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0438191
rosa_samantha	Rh2CG229900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	113, 128
AcuI	CTGAAG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	7, 211
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	244, 265
BmuI	ACTGGG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	113, 128
BspANI	GGCC	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	7, 211
BspQI	GCTCTTC	2 cut(s)	81, 264
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	81, 264
BstC8I	GCNNGC	2 cut(s)	126, 242
BstF5I	GGATG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 263
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	126, 242
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	91, 212, 244, 266
CviKI_1	RGCY	4 cut(s)	91, 212, 244, 266
Eam1104I	CTCTTC	2 cut(s)	81, 264
EarI	CTCTTC	2 cut(s)	81, 264
Eco57I	CTGAAG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	1 cut(s)	275
FaiI	YATR	5 cut(s)	49, 198, 221, 273, 280
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	275
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	223, 240, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 263
Hsp92II	CATG	1 cut(s)	275
LguI	GCTCTTC	2 cut(s)	81, 264
LpnPI	CCDG	8 cut(s)	52, 65, 110, 152, 209, 226, 234, 248
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	244, 265
MaeI	CTAG	1 cut(s)	92
MboII	GAAGA	3 cut(s)	98, 145, 251
MnlI	CCTC	6 cut(s)	19, 47, 61, 76, 193, 225
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	125, 263
NciI	CCSGG	1 cut(s)	40
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	7, 211
NsiI	ATGCAT	1 cut(s)	280
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	2 cut(s)	81, 264
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	7, 211
PspPI	GGNCC	1 cut(s)	210
SapI	GCTCTTC	2 cut(s)	81, 264
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	2 cut(s)	11, 93
SfaNI	GCATC	2 cut(s)	244, 265
SfcI	CTRYAG	1 cut(s)	77
SsiI	CCGC	2 cut(s)	113, 128
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	103
TspRI	CASTG	1 cut(s)	253
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.