Rh2CG234100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
23976190 .. 23977108
919 bp
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UTR
Exon/CDS
Intron
Rh2CG234100.1

Sequence Viewer

Length: 354 bp
ATGGCTAGAGCAAAGCTCCAAAGAGAGACGAATTCCGAAGTTACAATGAGAAATTCAAAGTGCTTCGATATGAATGACGCACTCTTCGATTTGAAGATTCGTCAAAGCACAGTCAAAATTTTGGCTGCCCTCCGACAATCGAAGTCGGCTTCTCTTTCCTTTATGCAACAACCTCATTGCCTCACCATTCCTGTGTTTTGCTGTTTTATGAGGGAAGCACACTTTGGGTATCTTTCAGAATTGCTTGATTCTGAGAGAGTGAAAGAAGGTGAGGATGTTTGTGAAGTCCGGTTTGAAGTGGAAGCGGATTTGACTATGTCAAGTCAAATGCATAGGTTCTTCCGCCACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.69

Weight (kDa)

7.68

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029888)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0111981
rosa_samantha Rh2CG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 305, 343, 349
AcsI RAATTY 3 cut(s) 31, 52, 117
AgsI TTSAA 3 cut(s) 57, 94, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 3 cut(s) 31, 52, 117
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AsuHPI GGTGA 2 cut(s) 175, 281
BbvI GCAGC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BplI GAGNNNNNCTC 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 175
BseGI GGATG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BspACI CCGC 3 cut(s) 305, 343, 349
BspCNI CTCAG 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 280
CseI GACGC 1 cut(s) 86
CviJI RGCY 4 cut(s) 5, 16, 125, 149
CviKI_1 RGCY 4 cut(s) 5, 16, 125, 149
DdeI CTNAG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 20
FaiI YATR 5 cut(s) 71, 164, 209, 317, 333
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 86
HinfI GANTC 2 cut(s) 97, 248
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 175, 281
Hpy188I TCNGA 4 cut(s) 37, 134, 238, 253
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 166, 331
HpyF3I CTNAG 1 cut(s) 252
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 204, 302
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 3 cut(s) 76, 106, 331
MluCI AATT 4 cut(s) 31, 52, 117, 239
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 140, 183, 191, 204, 265
Mph1103I ATGCAT 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 2 cut(s) 97, 248
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 191
SatI GCNGC 1 cut(s) 126
SetI ASST 4 cut(s) 18, 175, 271, 338
SgeI CNNG 5 cut(s) 18, 203, 257, 301, 333
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 4 cut(s) 31, 52, 117, 239
SsiI CCGC 3 cut(s) 305, 343, 349
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 66, 87, 140
TasI AATT 4 cut(s) 31, 52, 117, 239
TfiI GAWTC 2 cut(s) 97, 248
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 86
Tth111I GACNNNGTC 1 cut(s) 316
XapI RAATTY 3 cut(s) 31, 52, 117
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.