Rh2CG272100

Violaxanthin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
29764660 .. 29765090
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG272100.1

Sequence Viewer

Length: 348 bp
ATGGCTCTGGAAGCTCCCCTTCTTCCCAAACCCACAACCGGATTTTCATTCAACCACCGCCGTGTCGCCGCCTCTGCCGCCGCTTTTCTTCGACTTCACAGAGGAGGACCTCATTCCCCATTCTCCGTCGGGAAAACCACTCGTCGTGTCCCAACTACCATATTGGCGGCTAAGGCGGGTGCTGTGACTGAGCCGGTGACGCAATTGGAGTCAAAGCCGGTGAGAATAGTAGCCCTCGTCGGCAAAGGTAGCGTCAGCCCTCTCAAGGCTACACCTTGGGAAGACGTCATGCTCCACACCGAATCTTTTGTTACCAGAGATGCTGTTGTTACTGTGTCCATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.24

Weight (kDa)

10.57

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029724)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117431
rosa_samantha Rh2CG272100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AciI CCGC 6 cut(s) 58, 69, 78, 81, 167, 176
AcyI GRCGYC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 38, 265
AgsI TTSAA 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 208, 232
AvaII GGWCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 45
BisI GCNGC 4 cut(s) 69, 78, 81, 168
BlsI GCNGC 4 cut(s) 70, 79, 82, 169
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 265
Bse118I RCCGGY 2 cut(s) 193, 217
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 38, 265
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 39, 194, 218
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 38, 265
BsmFI GGGAC 1 cut(s) 134
BspACI CCGC 6 cut(s) 58, 69, 78, 81, 167, 176
BspCNI CTCAG 1 cut(s) 181
BsrFI RCCGGY 2 cut(s) 193, 217
BssAI RCCGGY 2 cut(s) 193, 217
BssECI CCNNGG 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 171, 189
BstMWI GCNNNNNNNGC 6 cut(s) 11, 74, 77, 173, 199, 249
BstV2I GAAGAC 1 cut(s) 288
Cfr10I RCCGGY 2 cut(s) 193, 217
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 2 cut(s) 208, 241
CviAII CATG 1 cut(s) 289
CviJI RGCY 8 cut(s) 5, 14, 170, 193, 217, 233, 258, 269
CviKI_1 RGCY 8 cut(s) 5, 14, 170, 193, 217, 233, 258, 269
DdeI CTNAG 2 cut(s) 171, 189
Eco130I CCWWGG 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 161, 290, 341
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 69, 78, 81, 168
Fsp4HI GCNGC 4 cut(s) 69, 78, 81, 168
GluI GCNGC 4 cut(s) 69, 78, 81, 168
HapII CCGG 3 cut(s) 39, 194, 218
HgaI GACGC 2 cut(s) 208, 241
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 1 cut(s) 292
HinfI GANTC 2 cut(s) 209, 302
HpaII CCGG 3 cut(s) 39, 194, 218
HphI GGTGA 2 cut(s) 208, 232
Hpy188III TCNNGA 2 cut(s) 8, 130
Hpy99I CGWCG 3 cut(s) 131, 147, 242
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 74, 77, 173, 199, 249
HpyF3I CTNAG 2 cut(s) 171, 189
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 1 cut(s) 292
LmnI GCTCC 2 cut(s) 19, 297
LpnPI CCDG 4 cut(s) 52, 207, 231, 328
LweI GCATC 1 cut(s) 310
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 184, 196, 310, 328
MboII GAAGA 3 cut(s) 14, 80, 293
MfeI CAATTG 1 cut(s) 203
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 6 cut(s) 82, 95, 98, 120, 245, 270
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 3 cut(s) 39, 194, 218
MunI CAATTG 1 cut(s) 203
MwoI GCNNNNNNNGC 6 cut(s) 11, 74, 77, 173, 199, 249
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 184, 196
OliI CACNNNNGTG 1 cut(s) 60
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 4 cut(s) 70, 79, 82, 169
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 60
SatI GCNGC 4 cut(s) 69, 78, 81, 168
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 218
SetI ASST 5 cut(s) 16, 112, 250, 277, 288
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 203
SsiI CCGC 6 cut(s) 58, 69, 78, 81, 167, 176
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 203
TauI GCSGC 4 cut(s) 71, 80, 83, 170
TfiI GAWTC 1 cut(s) 302
TseFI GTSAC 2 cut(s) 184, 196
Tsp45I GTSAC 2 cut(s) 184, 196
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 107
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.