Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0033895

Physical Location & Seq

Genomic Coordinates Reverse (-)

54503246 .. 54506984

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCCAGGTTCAACTGTTTAAGTATGTATTGGGCCGGGTCGGGTTGCAATTCGTTTCGGATGCAAGCAGCTCTTAAAAGCGCACCTGACTCCATGAGTATGTTGAGCTTGAAAGATTACATTGATCCAAATCTGATGGACTTGTATCCTCATGATTGTCTACTCAAGCATCTCTCCAAGAGAAAGGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

64

Amino Acids

7.32

Weight (kDa)

8.54

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0033895)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG414700 Rh2CG401100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	13, 112
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	71, 108
AluI	AGCT	2 cut(s)	71, 108
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	7, 37
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	7, 37
BmsI	GCATC	2 cut(s)	51, 178
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	151
BspPI	GGATC	1 cut(s)	119
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 35
BstV1I	GCAGC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	94, 152
CviJI	RGCY	3 cut(s)	35, 71, 108
CviKI_1	RGCY	3 cut(s)	35, 71, 108
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	97, 155
FaiI	YATR	5 cut(s)	26, 95, 101, 153, 193
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	2 cut(s)	93, 151
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	69
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	97, 155
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	60, 135
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	48, 64
Hsp92II	CATG	2 cut(s)	97, 155
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	19, 49, 99
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	2 cut(s)	51, 178
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	2 cut(s)	159, 181
MseI	TTAA	2 cut(s)	20, 75
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	7, 37
MvaI	CCWGG	1 cut(s)	7
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	97, 155
PagI	TCATGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	20, 75
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	7, 37
SetI	ASST	4 cut(s)	11, 73, 88, 110
SfaNI	GCATC	2 cut(s)	51, 178
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	5, 35
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	20, 75
Tru9I	TTAA	2 cut(s)	20, 75
TseI	GCWGC	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.