Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0033908

Physical Location & Seq

Genomic Coordinates Reverse (-)

56979399 .. 56982830

Gene Structure 3432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGAACAATAAATCAAAGACTGTCACATTCAACAGATTTCCCTATAACAAACAGTTTGTGCATTGCTACCCTAGCTTGAGCAGCATTGGCTTAAAAATTAGAGGCATGCATACATTGATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCAGATCGCCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGTCATTTGCCATTCACAGAGAAACAAGTAATAACTCCACCAGGATCTGTTTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGAATAAAAATTGGGAAGATCTTGATTCATCGTGATGGAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTTTTAGACCCTGTACTTGCTACAGGTAACTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATATCTGCTCCTGAGGGAATTCATTGTGTTTACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

9.0

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPRTase	PF14681	34 - 193	7.7e-56	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0033908)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG431100 Rh2CG416800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	34, 294, 497
AjnI	CCWGG	2 cut(s)	241, 486
AluBI	AGCT	3 cut(s)	78, 400, 415
AluI	AGCT	3 cut(s)	78, 400, 415
Alw26I	GTCTC	2 cut(s)	120, 378
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	320
AsuII	TTCGAA	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	374, 383
BciT130I	CCWGG	2 cut(s)	243, 488
BcoDI	GTCTC	2 cut(s)	120, 378
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	468
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	243, 488
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	243, 488
BmrI	ACTGGG	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	199, 420
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	64, 326
BseBI	CCWGG	2 cut(s)	243, 488
BseDI	CCNNGG	2 cut(s)	199, 420
BseMI	GCAATG	2 cut(s)	64, 326
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	120, 378
BsmBI	CGTCTC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	166, 245, 363
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	64, 326
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	199, 420
BssMI	GATC	3 cut(s)	166, 245, 363
BssT1I	CCWWGG	2 cut(s)	199, 420
Bst2UI	CCWGG	2 cut(s)	243, 488
Bst4CI	ACNGT	2 cut(s)	25, 57
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	110, 333
BstDEI	CTNAG	1 cut(s)	561
BstKTI	GATC	3 cut(s)	169, 248, 366
BstMAI	GTCTC	2 cut(s)	120, 378
BstMBI	GATC	3 cut(s)	166, 245, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 90, 332, 488
BstNI	CCWGG	2 cut(s)	243, 488
BstNSI	RCATGY	2 cut(s)	112, 339
BstSCI	CCNGG	2 cut(s)	241, 486
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	245, 363
BstYI	RGATCY	2 cut(s)	245, 363
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	110, 333
CaiI	CAGNNNCTG	1 cut(s)	248
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	6 cut(s)	109, 146, 194, 316, 336, 440
CviJI	RGCY	6 cut(s)	78, 93, 198, 400, 415, 491
CviKI_1	RGCY	6 cut(s)	78, 93, 198, 400, 415, 491
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	168, 247, 365
DpnII	GATC	3 cut(s)	166, 245, 363
Eco130I	CCWWGG	2 cut(s)	199, 420
Eco31I	GGTCTC	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	561
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	241, 486
EcoT14I	CCWWGG	2 cut(s)	199, 420
EcoT22I	ATGCAT	2 cut(s)	114, 328
ErhI	CCWWGG	2 cut(s)	199, 420
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	6 cut(s)	112, 149, 197, 319, 339, 443
FatI	CATG	6 cut(s)	108, 145, 193, 315, 335, 439
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	198
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	112, 149, 197, 319, 339, 443
HinfI	GANTC	3 cut(s)	121, 370, 524
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	2 cut(s)	166, 433
Hpy188III	TCNNGA	5 cut(s)	125, 367, 377, 521, 560
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	2 cut(s)	25, 57
HpyCH4V	TGCA	6 cut(s)	64, 112, 273, 326, 335, 342
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 90, 332, 488
HpyF3I	CTNAG	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	112, 149, 197, 319, 339, 443
Kzo9I	GATC	3 cut(s)	166, 245, 363
LmnI	GCTCC	3 cut(s)	190, 420, 562
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	25, 473
MalI	GATC	3 cut(s)	168, 247, 365
MboI	GATC	3 cut(s)	166, 245, 363
MboII	GAAGA	1 cut(s)	373
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	2 cut(s)	245, 363
MluCI	AATT	6 cut(s)	99, 174, 278, 294, 354, 567
MnlI	CCTC	2 cut(s)	98, 556
Mph1103I	ATGCAT	2 cut(s)	114, 328
MseI	TTAA	2 cut(s)	95, 542
MslI	CAYNNNNRTG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	243, 488
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	2 cut(s)	243, 488
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 90, 332, 488
NdeII	GATC	3 cut(s)	166, 245, 363
NlaIII	CATG	6 cut(s)	112, 149, 197, 319, 339, 443
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	2 cut(s)	114, 328
NspI	RCATGY	2 cut(s)	112, 339
NspV	TTCGAA	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	121, 370, 524
PkrI	GCNGC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	241, 486
PspGI	CCWGG	2 cut(s)	241, 486
PspN4I	GGNNCC	1 cut(s)	519
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	245, 363
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	95, 542
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	3 cut(s)	166, 245, 363
ScrFI	CCNGG	2 cut(s)	243, 488
SetI	ASST	5 cut(s)	80, 402, 417, 475, 549
SfcI	CTRYAG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	6 cut(s)	99, 174, 278, 294, 354, 567
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	241, 486
StyI	CCWWGG	2 cut(s)	199, 420
TaaI	ACNGT	2 cut(s)	25, 57
TaqI	TCGA	2 cut(s)	124, 301
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	99, 174, 278, 294, 354, 567
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	3 cut(s)	121, 370, 524
Tru1I	TTAA	2 cut(s)	95, 542
Tru9I	TTAA	2 cut(s)	95, 542
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	362, 560
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	2 cut(s)	112, 339
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	2 cut(s)	114, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.