Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0033913

Physical Location & Seq

Genomic Coordinates Reverse (-)

58835358 .. 58835723

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCATCTGCAGCTACTGCAGGCTTTCATGAAAGATTTGCGAAGGCTCAAAGTACTGGAAAGTAAGAGGGAGGAGTCCTGGGTGATAGCAGCAAACAAGACCCTTGAAAAGGCAAAGGGTGCCATTAAAATCATTAATAAAGCAGCAGCAAATCAACGAAGAAGTTGGCTTTCAGATTGCAGAAATTGGAGGGCTGAGAGGAAGCTCAAGGGGCACATAATGTACTTTGACAGCAGGATCTCTGGCCTGCTGGAAACAAAGGAAAGATATGGTTTTACATTTGTCAAACGAGACTCGATCATCAAATATAATGAACACCTTGTTTCTCAACGGAAAAGCAATCAATATCAGATCGATCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

121

Amino Acids

14.48

Weight (kDa)

10.28

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0033913)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG445900 Rh2CG432600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	245
AfaI	GTAC	2 cut(s)	54, 224
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	13, 205
AluI	AGCT	2 cut(s)	13, 205
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	10, 89, 143, 146
AseI	ATTAAT	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	22, 101, 155, 158
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	8, 17
BisI	GCNGC	4 cut(s)	11, 90, 144, 147
BlsI	GCNGC	4 cut(s)	12, 91, 145, 148
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	22, 101, 155, 158
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	237, 297, 351, 355
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	12, 21
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	4 cut(s)	237, 297, 351, 355
Bst2UI	CCWGG	1 cut(s)	79
BstAPI	GCANNNNNTGC	2 cut(s)	16, 119
BstC8I	GCNNGC	2 cut(s)	21, 248
BstDEI	CTNAG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstKTI	GATC	4 cut(s)	240, 300, 354, 358
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	4 cut(s)	237, 297, 351, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 16, 119, 211
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	2 cut(s)	8, 17
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	4 cut(s)	22, 101, 155, 158
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	21, 248
CaiI	CAGNNNCTG	1 cut(s)	16
CciI	TCATGA	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	53, 223
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	7 cut(s)	13, 23, 46, 169, 194, 205, 246
CviKI_1	RGCY	7 cut(s)	13, 23, 46, 169, 194, 205, 246
CviQI	GTAC	2 cut(s)	53, 223
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	4 cut(s)	239, 299, 353, 357
DpnII	GATC	4 cut(s)	237, 297, 351, 355
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 218, 270, 309
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	11, 90, 144, 147
Fsp4HI	GCNGC	4 cut(s)	11, 90, 144, 147
GluI	GCNGC	4 cut(s)	11, 90, 144, 147
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	2 cut(s)	74, 293
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	175, 351
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	4, 10, 19, 180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 16, 119, 211
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	237, 297, 351, 355
LpnPI	CCDG	8 cut(s)	5, 41, 64, 91, 220, 228, 236, 260
Lsp1109I	GCAGC	4 cut(s)	22, 101, 155, 158
LweI	GCATC	1 cut(s)	13
MalI	GATC	4 cut(s)	239, 299, 353, 357
MboI	GATC	4 cut(s)	237, 297, 351, 355
MboII	GAAGA	1 cut(s)	171
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	83, 287
MnlI	CCTC	4 cut(s)	60, 64, 183, 192
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	126, 135
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	10, 16, 119, 211
NdeII	GATC	4 cut(s)	237, 297, 351, 355
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	12, 91, 145, 148
PleI	GAGTC	2 cut(s)	82, 287
PpsI	GAGTC	2 cut(s)	82, 287
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	12, 21
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	54, 224
RsaNI	GTAC	2 cut(s)	53, 223
SaqAI	TTAA	2 cut(s)	126, 135
SatI	GCNGC	4 cut(s)	11, 90, 144, 147
Sau3AI	GATC	4 cut(s)	237, 297, 351, 355
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	2 cut(s)	83, 287
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	15, 207, 321
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	8, 17
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	77
TaqI	TCGA	2 cut(s)	296, 354
TasI	AATT	1 cut(s)	184
TatI	WGTACW	2 cut(s)	52, 222
Tru1I	TTAA	2 cut(s)	126, 135
Tru9I	TTAA	2 cut(s)	126, 135
TseI	GCWGC	4 cut(s)	10, 89, 143, 146
TspDTI	ATGAA	3 cut(s)	16, 44, 327
TspGWI	ACGGA	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.