Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0024885

Physical Location & Seq

Genomic Coordinates Reverse (-)

7200104 .. 7202903

Gene Structure 2800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTATGGTTAAGAATGAAAGAGACTGCTCCGACGCCATCGACCACTTCAGTTATACCAAGTTTTGTTTTCTTAAGGTTCAACCCTGTGTTTGTATTTGGAGTGACAAATGCTCCTTGAAAATGGGAAGAAGGCACCCCTTCATACTTGCAGGATCTCTCATGATCTTTGTTGTCGTCGTATTAATCGGATTTTCTGCAGACATTGGATACTTATTAGTAGATACACACGAGCATTGCAGGGCTTTTGTCAATGGCAAATGCTGGTCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

104

Amino Acids

12.08

Weight (kDa)

8.16

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0024885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094581
rosa_samantha	Rh2CG095900 Rh2DG092300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	83, 121
AleI	CACNNNNGTG	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	163
AseI	ATTAAT	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	230
BccI	CCATC	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse3DI	GCAATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	155, 165
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	235
BssMI	GATC	2 cut(s)	155, 165
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	158, 168
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	155, 165
BstSFI	CTRYAG	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	44
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	2 cut(s)	5, 245
CviKI_1	RGCY	2 cut(s)	5, 245
DpnI	GATC	2 cut(s)	157, 167
DpnII	GATC	2 cut(s)	155, 165
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	34
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	8, 57, 146, 164
FatI	CATG	1 cut(s)	162
FspBI	CTAG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	34, 191
Hpy188III	TCNNGA	2 cut(s)	163, 270
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	2 cut(s)	38, 182
HpyAV	CCTTC	2 cut(s)	126, 151
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	3 cut(s)	152, 200, 240
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	155, 165
LmnI	GCTCC	2 cut(s)	35, 119
LpnPI	CCDG	5 cut(s)	100, 138, 226, 250, 283
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	2 cut(s)	104, 305
MalI	GATC	2 cut(s)	157, 167
MboI	GATC	2 cut(s)	155, 165
MboII	GAAGA	2 cut(s)	141, 284
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	3 cut(s)	12, 75, 185
MslI	CAYNNNNRTG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	74
NdeII	GATC	2 cut(s)	155, 165
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	104, 305
OliI	CACNNNNGTG	1 cut(s)	303
PagI	TCATGA	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	12, 75, 185
Sau3AI	GATC	2 cut(s)	155, 165
Sau96I	GGNCC	1 cut(s)	267
SetI	ASST	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	288
Tru1I	TTAA	3 cut(s)	12, 75, 185
Tru9I	TTAA	3 cut(s)	12, 75, 185
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	104, 305
Tsp45I	GTSAC	2 cut(s)	104, 305
TspDTI	ATGAA	3 cut(s)	33, 133, 284
TspRI	CASTG	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	185
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.