Rh2DG123800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0029885
Physical Location & Seq
Forward (+)
10323899 .. 10324297
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG123800.1

Sequence Viewer

Length: 228 bp
ATGTCTCAATCAAATGTTCTCAAAAGGCATTTTAGTTGGCTTCCCGCTGTCTTATTCGAGATCCAAAGGCTAGACTTGATGCTTGAAGTGATGAAGTCTCTCGCCAACCTGAAGGACCTGACCCGTTCCTCAGCTCACCTCCAAGCCTTGCAAGCAGAGCATCCGGATTCCATTCCAAATTGGCAAATTCTAAGAAATGGCGTTGGACTGCAAGGCGCTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.41

Weight (kDa)

8.31

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029885)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0098311
rosa_samantha Rh2DG123800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 134, 224
AluI AGCT 2 cut(s) 134, 224
Alw26I GTCTC 2 cut(s) 9, 102
AlwI GGATC 1 cut(s) 55
Aor13HI TCCGGA 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 218, 221
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 9, 102
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 219
BisI GCNGC 2 cut(s) 219, 222
BlsI GCNGC 2 cut(s) 220, 223
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 2 cut(s) 69, 169
Bpu10I CCTNAGC 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 163
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 9, 102
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 143
BspEI TCCGGA 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 55
BssMI GATC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 130, 191
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 9, 102
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 152, 157
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 115
CviJI RGCY 5 cut(s) 40, 70, 134, 146, 224
CviKI_1 RGCY 5 cut(s) 40, 70, 134, 146, 224
DdeI CTNAG 2 cut(s) 130, 191
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 115
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 219, 222
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 219, 222
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 219, 222
HaeII RGCGCY 1 cut(s) 219
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 58, 164
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 151, 211, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 157
HpyF3I CTNAG 2 cut(s) 130, 191
HspAI GCGC 1 cut(s) 216
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 122, 131, 177
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 2 cut(s) 69, 169
MaeI CTAG 1 cut(s) 71
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MflI RGATCY 1 cut(s) 60
MluCI AATT 2 cut(s) 178, 186
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 2 cut(s) 139, 149
MroI TCCGGA 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 152, 157
NdeII GATC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 220, 223
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 60
SatI GCNGC 2 cut(s) 219, 222
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 115
SetI ASST 5 cut(s) 111, 120, 136, 141, 226
SfaNI GCATC 2 cut(s) 69, 169
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 115
Sse9I AATT 2 cut(s) 178, 186
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 71
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 178, 186
TfiI GAWTC 1 cut(s) 167
TseI GCWGC 2 cut(s) 218, 221
TspDTI ATGAA 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 186
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.