Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022654

Physical Location & Seq

Genomic Coordinates Forward (+)

10581650 .. 10582745

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGCAGTCCAAATCAAACGGTGAATTTGACATTGAAAGGCGGAAAGCATTATAATGTTATTGATCCACTTGTAGTTCTTTCTGATGGGGAAGGAAATATACTGTTATATTGTCTGGGTGTTGTCAAAAGTGAAGATGTAAATATCATTGGACAAAACTTCATGACCGGTTACCGTATAATCTTTGATCGCGAGAAGATGGTAATGGGTTGGACAGAGTCAGATTGTTACAACGATGAGGAAACCGCAACTCTTCCCATCAGTCCATCCAAATCTCCCTCATCCAAATCTCCAGCCGCATCCCCCACGGTCAATCCAGAAGCCACAGTTAACCCTACTTCTGAGATACCATCAGACTCATCACCAAGTGATTCACCCAAATTGAGCTCTTTTACTTGTGCACTCATCATGGTTCTTTCTGCAATTTTTGCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

146

Amino Acids

15.65

Weight (kDa)

4.49

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0022654)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0098561
rosa_roxburghii	Rroxscaffold_2G00143900
rosa_samantha	Rh2BG124300 Rh2DG126300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	42, 246, 297
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	368
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw21I	GWGCWC	2 cut(s)	389, 403
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	34, 354, 366
BaeGI	GKGCMC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	84, 116
Bbv12I	GWGCWC	2 cut(s)	389, 403
BccI	CCATC	5 cut(s)	80, 193, 266, 274, 358
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	266, 281, 299
BseMII	CTCAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	192
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	389, 403
BsiSI	CCGG	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	389, 403
Bsp143I	GATC	2 cut(s)	64, 187
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	3 cut(s)	42, 246, 297
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	162
BspPI	GGATC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	64, 187
Bst4CI	ACNGT	5 cut(s)	22, 105, 176, 310, 328
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	266, 281, 299
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	67, 190
BstMBI	GATC	2 cut(s)	64, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstPI	GGTNACC	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	266, 281, 299
BtuMI	TCGCGA	1 cut(s)	192
CciI	TCATGA	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	2 cut(s)	163, 409
CviJI	RGCY	3 cut(s)	296, 323, 387
CviKI_1	RGCY	3 cut(s)	296, 323, 387
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	66, 189
DpnII	GATC	2 cut(s)	64, 187
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	387
EcoO65I	GGTNACC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	2 cut(s)	166, 412
FaiI	YATR	6 cut(s)	54, 101, 109, 164, 179, 410
FatI	CATG	2 cut(s)	162, 408
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	3 cut(s)	253, 268, 286
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	166, 412
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	218, 356, 371
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	34, 354, 366
Hpy166II	GTNNAC	2 cut(s)	331, 401
Hpy188I	TCNGA	4 cut(s)	85, 223, 343, 355
Hpy188III	TCNNGA	3 cut(s)	163, 191, 317
Hpy8I	GTNNAC	2 cut(s)	331, 401
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	5 cut(s)	22, 105, 176, 310, 328
HpyCH4V	TGCA	3 cut(s)	6, 401, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	166, 412
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	64, 187
LpnPI	CCDG	4 cut(s)	101, 181, 306, 330
LweI	GCATC	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	170, 227
MalI	GATC	2 cut(s)	66, 189
MboI	GATC	2 cut(s)	64, 187
MboII	GAAGA	3 cut(s)	146, 208, 245
MhlI	GDGCHC	2 cut(s)	389, 403
MluCI	AATT	3 cut(s)	25, 380, 423
MlyI	GAGTC	2 cut(s)	227, 350
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	2 cut(s)	232, 289
MseI	TTAA	2 cut(s)	330, 439
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	2 cut(s)	64, 187
NlaIII	CATG	2 cut(s)	166, 412
NruI	TCGCGA	1 cut(s)	192
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	2 cut(s)	226, 350
PpsI	GAGTC	2 cut(s)	226, 350
PsiI	TTATAA	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	217
RruI	TCGCGA	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	330, 439
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	64, 187
SchI	GAGTC	2 cut(s)	227, 350
SduI	GDGCHC	2 cut(s)	389, 403
SetI	ASST	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	25, 380, 423
SsiI	CCGC	3 cut(s)	42, 246, 297
SstI	GAGCTC	1 cut(s)	389
TaaI	ACNGT	5 cut(s)	22, 105, 176, 310, 328
TasI	AATT	3 cut(s)	25, 380, 423
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	330, 439
Tru9I	TTAA	2 cut(s)	330, 439
TspDTI	ATGAA	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.