Rh2DG297800

Cell morphogenesis N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0029822
Physical Location & Seq
Reverse (-)
35336184 .. 35339403
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG297800.1

Sequence Viewer

Length: 1158 bp
ATGACTCTTGGCCATTCACATCTTGAAGCATGCGAAATCATGTTTACGGAGCTTGCGAATTTCATTGATGAGGTTTCTTCAGAGACGGAGGGAAAACCAAAGTGGAAGATTCAGAAGTCTCGCCGTGAAGAGCTTCGAATCCATATTGCAAATATATTTCGTGCTGTTGCTGAGAATGTATGGCCTGGCATGCTGGCCCGTAAACCAGTTTTCCGTCTCCACTATCTGAAGTTCATTGATGAGACAACCAGACAGATCCTAACAGCTCCTACTGAAAACTTCCAAGATATGCAGCCACTCCGCTATGCACTTGCTTCTGTTTTAAGATCACTAGCTCCTGAATTTGTTGAGTCAAAATCAGAGAAATTTGATGTCAGGACTAGAAAGAAATTGTTTGATCTTCTTCTTTCCTGGTGTGATGAAACAGGCACCAATTATGGTCAAGACGGTGTCAGTGATTACCGGCGAGAAGAAGAACGTTACAACTCCTCTCAGAATGCTCGGTCAAAAGATTCTGTGGACAAAATATCATTTGATAAAGAACTGAGTGAACAAGTTGAGGCAATCCAGTGGGCCTCCATGAATGCTATGGCTTCACTCCTATACGGGCCTTGCTTTGATGATAATGCGAGAAAGATGAGTGGGCGGGTTATATCTTGGATCAACAGTTTGTTCAATGAGCCTGCGCCTAGGGCTCCATTTGGATACTCGCCTGCTGATCCTAGAACTCCATCTTATTCAAAGTACACAGGAGAAGGTGGCCTTGGAACTGCTGGTCGTGATAGGCATAGGGGTGGCCATCATCGCATTTCTTTAGCAAAACTAGCTCTGAAGAATCTATTACAGACAAATTTGGACCTGTTTCCTGCTTGTATTGATCAGTGCTATTACTCTGATGCTGCCATAGCTGATGGTTACTTCAGTGTGCTAGCTGAAGTCTACATGCGCCAAGAGATACCGAAATGTGAAATCCAGAGACTTTTGAGCCTGATTCTCTACAAGGTGGTGGATCCATCAAGACAAATCCGTGGTGATGCACTTCAGATGCTTGAGACACTTTCTGTTCGTGAGTGGGCTGAGGATGGCATTGAGGGCTCAGGAAATTATCGGGCTGCTGTTGTGGGTAACCTTCCTGATTCATACCAACAATTCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOR2-PAG1_C MOR2-PAG1_N MOR2-PAG1_mid

Protein Analysis

385

Amino Acids

43.88

Weight (kDa)

5.91

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOR2-PAG1_mid PF14228 1 - 385 6.2e-238 Cell morphogenesis central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029822)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117981
rosa_samantha Rh2DG297800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 939
AciI CCGC 2 cut(s) 301, 646
AclI AACGTT 1 cut(s) 478
AclWI GGATC 5 cut(s) 250, 668, 713, 1004, 1017
AcoI YGGCCR 2 cut(s) 10, 796
AcsI RAATTY 4 cut(s) 58, 341, 365, 850
AcuI CTGAAG 6 cut(s) 63, 248, 851, 904, 954, 1025
AfaI GTAC 1 cut(s) 746
AgsI TTSAA 3 cut(s) 26, 676, 741
AjnI CCWGG 2 cut(s) 184, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 7 cut(s) 52, 133, 266, 335, 827, 908, 932
AluI AGCT 7 cut(s) 52, 133, 266, 335, 827, 908, 932
Alw26I GTCTC 6 cut(s) 77, 123, 221, 236, 970, 1046
AlwI GGATC 5 cut(s) 250, 668, 713, 1004, 1017
AoxI GGCC 7 cut(s) 10, 182, 195, 573, 608, 760, 796
ApeKI GCWGC 3 cut(s) 292, 899, 1112
ApoI RAATTY 4 cut(s) 58, 341, 365, 850
Asp700I GAANNNNTTC 1 cut(s) 132
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 2 cut(s) 688, 948
AspS9I GGNCC 4 cut(s) 196, 573, 608, 856
AsuHPI GGTGA 1 cut(s) 1043
AsuII TTCGAA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 928
AvaII GGWCC 1 cut(s) 856
AvrII CCTAGG 1 cut(s) 689
BalI TGGCCA 2 cut(s) 12, 798
BamHI GGATCC 1 cut(s) 1009
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 2 cut(s) 697, 1097
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 3 cut(s) 304, 886, 1099
BccI CCATC 5 cut(s) 739, 807, 905, 1021, 1076
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 186, 412
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 6 cut(s) 77, 123, 221, 236, 970, 1046
BfaI CTAG 6 cut(s) 332, 381, 690, 723, 824, 929
BfuI GTATCC 1 cut(s) 698
BisI GCNGC 3 cut(s) 293, 900, 1113
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 3 cut(s) 294, 901, 1114
Bme1390I CCNGG 2 cut(s) 186, 412
Bme18I GGWCC 1 cut(s) 856
BmgT120I GGNCC 4 cut(s) 196, 573, 608, 856
BmiI GGNNCC 3 cut(s) 430, 696, 1011
BmrFI CCNGG 2 cut(s) 186, 412
BmsI GCATC 3 cut(s) 886, 1024, 1035
BmtI GCTAGC 1 cut(s) 932
Bpu10I CCTNAGC 2 cut(s) 1077, 1096
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 1070
BsaJI CCNNGG 3 cut(s) 689, 763, 1027
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 206, 568
BseBI CCWGG 2 cut(s) 186, 412
BseDI CCNNGG 3 cut(s) 689, 763, 1027
BseGI GGATG 1 cut(s) 1087
BseMII CTCAG 5 cut(s) 162, 506, 536, 1068, 1110
BseNI ACTGG 2 cut(s) 206, 568
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 3 cut(s) 304, 886, 1099
BshFI GGCC 7 cut(s) 12, 184, 197, 575, 610, 762, 798
BshNI GGYRCC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 463
BsmAI GTCTC 6 cut(s) 77, 123, 221, 236, 970, 1046
BsmBI CGTCTC 2 cut(s) 77, 221
BsmI GAATGC 2 cut(s) 502, 589
BsnI GGCC 7 cut(s) 12, 184, 197, 575, 610, 762, 798
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 697, 1097
Bsp143I GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
BspACI CCGC 2 cut(s) 301, 646
BspANI GGCC 7 cut(s) 12, 184, 197, 575, 610, 762, 798
BspCNI CTCAG 5 cut(s) 163, 505, 537, 1069, 1109
BspLI GGNNCC 3 cut(s) 430, 696, 1011
BspOI GCTAGC 1 cut(s) 932
BspPI GGATC 5 cut(s) 250, 668, 713, 1004, 1017
BspQI GCTCTTC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 2 cut(s) 206, 568
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 3 cut(s) 689, 763, 1027
BssMI GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
BssT1I CCWWGG 2 cut(s) 689, 763
Bst2UI CCWGG 2 cut(s) 186, 412
Bst4CI ACNGT 2 cut(s) 449, 668
Bst6I CTCTTC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 7 cut(s) 31, 54, 191, 195, 684, 714, 930
BstDEI CTNAG 5 cut(s) 171, 492, 545, 1077, 1096
BstDSI CCRYGG 1 cut(s) 1027
BstEII GGTNACC 1 cut(s) 1124
BstF5I GGATG 1 cut(s) 1087
BstHHI GCGC 2 cut(s) 688, 948
BstKTI GATC 7 cut(s) 258, 329, 400, 663, 721, 880, 1012
BstMAI GTCTC 6 cut(s) 77, 123, 221, 236, 970, 1046
BstMBI GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
BstMWI GCNNNNNNNGC 6 cut(s) 190, 692, 804, 824, 905, 1092
BstNI CCWGG 2 cut(s) 186, 412
BstNSI RCATGY 3 cut(s) 33, 193, 946
BstPI GGTNACC 1 cut(s) 1124
BstSCI CCNGG 2 cut(s) 184, 410
BstV1I GCAGC 3 cut(s) 304, 886, 1099
BstX2I RGATCY 2 cut(s) 255, 1009
BstYI RGATCY 2 cut(s) 255, 1009
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 7 cut(s) 12, 184, 197, 575, 610, 762, 798
BtgI CCRYGG 1 cut(s) 1027
BtgZI GCGATG 1 cut(s) 788
BtsCI GGATG 1 cut(s) 1087
BtsIMutI CAGTG 4 cut(s) 460, 575, 887, 928
Cac8I GCNNGC 7 cut(s) 31, 54, 191, 195, 684, 714, 930
CfoI GCGC 2 cut(s) 688, 948
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 4 cut(s) 196, 573, 608, 856
Csp6I GTAC 1 cut(s) 745
CviAII CATG 5 cut(s) 30, 40, 190, 580, 943
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 5 cut(s) 171, 492, 545, 1077, 1096
DpnI GATC 7 cut(s) 257, 328, 399, 662, 720, 879, 1011
DpnII GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
EaeI YGGCCR 2 cut(s) 10, 796
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 689, 763
Eco24I GRGCYC 2 cut(s) 697, 1097
Eco47I GGWCC 1 cut(s) 856
Eco57I CTGAAG 6 cut(s) 63, 248, 851, 904, 954, 1025
Eco91I GGTNACC 1 cut(s) 1124
EcoO65I GGTNACC 1 cut(s) 1124
EcoRII CCWGG 2 cut(s) 184, 410
EcoT14I CCWWGG 2 cut(s) 689, 763
EcoT38I GRGCYC 2 cut(s) 697, 1097
ErhI CCWWGG 2 cut(s) 689, 763
Esp3I CGTCTC 2 cut(s) 77, 221
FaeI CATG 5 cut(s) 33, 43, 193, 583, 946
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FatI CATG 5 cut(s) 29, 39, 189, 579, 942
FauI CCCGC 1 cut(s) 639
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 3 cut(s) 293, 900, 1113
FokI GGATG 1 cut(s) 1094
FriOI GRGCYC 2 cut(s) 697, 1097
Fsp4HI GCNGC 3 cut(s) 293, 900, 1113
FspBI CTAG 6 cut(s) 332, 381, 690, 723, 824, 929
GlaI GCGC 2 cut(s) 687, 947
GluI GCNGC 3 cut(s) 293, 900, 1113
HaeIII GGCC 7 cut(s) 12, 184, 197, 575, 610, 762, 798
HapII CCGG 1 cut(s) 463
HhaI GCGC 2 cut(s) 688, 948
Hin1II CATG 5 cut(s) 33, 43, 193, 583, 946
Hin6I GCGC 2 cut(s) 686, 946
HinP1I GCGC 2 cut(s) 686, 946
HinfI GANTC 8 cut(s) 4, 109, 138, 350, 512, 835, 991, 1136
HpaII CCGG 1 cut(s) 463
HphI GGTGA 1 cut(s) 1043
Hpy166II GTNNAC 6 cut(s) 45, 203, 520, 551, 747, 940
Hpy188I TCNGA 8 cut(s) 82, 114, 228, 361, 495, 831, 895, 1044
Hpy8I GTNNAC 6 cut(s) 45, 203, 520, 551, 747, 940
HpyAV CCTTC 2 cut(s) 749, 1139
HpyCH4III ACNGT 2 cut(s) 449, 668
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 149, 292, 308, 1037
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 692, 804, 824, 905, 1092
HpyF3I CTNAG 5 cut(s) 171, 492, 545, 1077, 1096
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 5 cut(s) 33, 43, 193, 583, 946
HspAI GCGC 2 cut(s) 686, 946
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 4 cut(s) 49, 271, 340, 700
Lsp1109I GCAGC 3 cut(s) 304, 886, 1099
LweI GCATC 3 cut(s) 886, 1024, 1035
MaeI CTAG 6 cut(s) 332, 381, 690, 723, 824, 929
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 3 cut(s) 479, 914, 1124
MalI GATC 7 cut(s) 257, 328, 399, 662, 720, 879, 1011
MboI GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
MboII GAAGA 8 cut(s) 69, 118, 140, 392, 395, 482, 485, 844
MflI RGATCY 2 cut(s) 255, 1009
MhlI GDGCHC 2 cut(s) 697, 1097
MlsI TGGCCA 2 cut(s) 12, 798
MluCI AATT 8 cut(s) 58, 341, 365, 389, 433, 850, 1102, 1148
MluNI TGGCCA 2 cut(s) 12, 798
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 7 cut(s) 64, 82, 499, 553, 586, 1072, 1084
Mox20I TGGCCA 2 cut(s) 12, 798
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 2 cut(s) 12, 798
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 792
Msp20I TGGCCA 2 cut(s) 12, 798
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 2 cut(s) 186, 412
Mva1269I GAATGC 2 cut(s) 502, 589
MvaI CCWGG 2 cut(s) 186, 412
MwoI GCNNNNNNNGC 6 cut(s) 190, 692, 804, 824, 905, 1092
NdeII GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
NheI GCTAGC 1 cut(s) 928
NlaIII CATG 5 cut(s) 33, 43, 193, 583, 946
NlaIV GGNNCC 3 cut(s) 430, 696, 1011
NspI RCATGY 3 cut(s) 33, 193, 946
NspV TTCGAA 1 cut(s) 136
PaeI GCATGC 2 cut(s) 33, 193
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 2 cut(s) 502, 589
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 6 cut(s) 109, 138, 512, 835, 991, 1136
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 3 cut(s) 294, 901, 1114
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp1406I AACGTT 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 184, 410
PspEI GGTNACC 1 cut(s) 1124
PspGI CCWGG 2 cut(s) 184, 410
PspN4I GGNNCC 3 cut(s) 430, 696, 1011
PspPI GGNCC 4 cut(s) 196, 573, 608, 856
PsuI RGATCY 2 cut(s) 255, 1009
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 3 cut(s) 293, 900, 1113
Sau3AI GATC 7 cut(s) 255, 326, 397, 660, 718, 877, 1009
Sau96I GGNCC 4 cut(s) 196, 573, 608, 856
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 186, 412
SduI GDGCHC 2 cut(s) 697, 1097
SfaNI GCATC 3 cut(s) 886, 1024, 1035
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 856
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
SphI GCATGC 2 cut(s) 33, 193
Sse9I AATT 8 cut(s) 58, 341, 365, 389, 433, 850, 1102, 1148
SsiI CCGC 2 cut(s) 301, 646
SspMI CTAG 6 cut(s) 332, 381, 690, 723, 824, 929
StyD4I CCNGG 2 cut(s) 184, 410
StyI CCWWGG 2 cut(s) 689, 763
TaaI ACNGT 2 cut(s) 449, 668
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 136
TaqII GACCGA 1 cut(s) 492
TasI AATT 8 cut(s) 58, 341, 365, 389, 433, 850, 1102, 1148
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 6 cut(s) 109, 138, 512, 835, 991, 1136
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 4 cut(s) 460, 575, 887, 928
TseI GCWGC 3 cut(s) 292, 899, 1112
TspDTI ATGAA 5 cut(s) 52, 223, 435, 596, 1128
TspGWI ACGGA 4 cut(s) 62, 101, 203, 1016
TspRI CASTG 4 cut(s) 460, 575, 887, 928
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 4 cut(s) 58, 341, 365, 850
XceI RCATGY 3 cut(s) 33, 193, 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmaJI CCTAGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 939
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 6 cut(s) 332, 381, 690, 723, 824, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.