Rh2DG403200

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0034342
Physical Location & Seq
Forward (+)
58707659 .. 58708186
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG403200.1

Sequence Viewer

Length: 528 bp
ATGTTCAACAGCTTCAACTCTCTAAAGCATCTGTCCATCCGTAACCGTCCTAAACTTCTGACACTACCAGCTGAATGTCTCCCAACCAGTCCTCAAGTTTTGAGTATTGACCCATGTGCAAGTCTCAGTCGGTTTGGCCCCGGAGAAGTACTTTCAAAACTAACATCCCTTGGTGATCTCTACCTTGAAGATTGCCCTGAACTCAAGTCCTTGCAAGAGGAAGGCCTGTCAGCGTCTCTCCAGCATCCGTCTATCCAAGGATGCCCCTCGCTGATAAGAAACTACGGAAAAGATGGCAGCGATTGGCCAAAGATCGAGGACATCCCCAATCTGGAAATAGAGACGCCATCTACCATGACTCCAAGCTCATCTTCTTCAGCACCTTGTTACAATATTTCTAGGAACCGCAGAGCTACGTTCATTAAAGATAGAGATCTACTTTATTACCTACTACAATTTTCAGTGTGTATGGTCTTATTGGAATTAGAGGCATTGAGCAAAAAAAACATGATTCCAACGATCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

5.71

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034342)

Species Orthologous Gene IDs
rosa_samantha Rh2CG366300 Rh2DG403200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 4 cut(s) 7, 16, 156, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 4 cut(s) 12, 71, 366, 413
AluI AGCT 4 cut(s) 12, 71, 366, 413
Alw26I GTCTC 4 cut(s) 83, 128, 240, 335
AlwI GGATC 1 cut(s) 514
AoxI GGCC 3 cut(s) 136, 223, 305
ApeKI GCWGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 185
BalI TGGCCA 1 cut(s) 307
BbvI GCAGC 1 cut(s) 309
BccI CCATC 3 cut(s) 44, 287, 355
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 4 cut(s) 83, 128, 240, 335
BfaI CTAG 1 cut(s) 399
BglII AGATCT 1 cut(s) 433
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 139, 404
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 37, 251, 253
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 78, 188
BpuMI CCSGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 139, 169, 256
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 87, 523
Bse8I GATNNNNATC 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 139, 169, 256
BseGI GGATG 5 cut(s) 36, 164, 244, 266, 321
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 2 cut(s) 87, 523
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 3 cut(s) 138, 225, 307
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 4 cut(s) 83, 128, 240, 335
BsmBI CGTCTC 2 cut(s) 240, 335
BsnI GGCC 3 cut(s) 138, 225, 307
Bsp143I GATC 4 cut(s) 175, 312, 433, 519
BspACI CCGC 1 cut(s) 406
BspANI GGCC 3 cut(s) 138, 225, 307
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 139, 404
BspPI GGATC 1 cut(s) 514
BsrI ACTGG 2 cut(s) 87, 523
BssECI CCNNGG 3 cut(s) 139, 169, 256
BssMI GATC 4 cut(s) 175, 312, 433, 519
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 169, 256
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 5 cut(s) 36, 164, 244, 266, 321
BstKTI GATC 4 cut(s) 178, 315, 436, 522
BstMAI GTCTC 4 cut(s) 83, 128, 240, 335
BstMBI GATC 4 cut(s) 175, 312, 433, 519
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 3 cut(s) 138, 225, 307
BtsCI GGATG 5 cut(s) 36, 164, 244, 266, 321
BtsIMutI CAGTG 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 2 cut(s) 222, 352
Csp6I GTAC 1 cut(s) 149
CviAII CATG 3 cut(s) 114, 355, 508
CviJI RGCY 7 cut(s) 12, 71, 138, 225, 307, 366, 413
CviKI_1 RGCY 7 cut(s) 12, 71, 138, 225, 307, 366, 413
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 125
DpnI GATC 4 cut(s) 177, 314, 435, 521
DpnII GATC 4 cut(s) 175, 312, 433, 519
EaeI YGGCCR 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 169, 256
Eco147I AGGCCT 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 169, 256
ErhI CCWWGG 2 cut(s) 169, 256
Esp3I CGTCTC 2 cut(s) 240, 335
FaeI CATG 3 cut(s) 117, 358, 511
FaiI YATR 4 cut(s) 115, 356, 470, 509
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 3 cut(s) 113, 354, 507
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 5 cut(s) 23, 151, 231, 273, 308
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 1 cut(s) 399
GluI GCNGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 3 cut(s) 138, 225, 307
HapII CCGG 1 cut(s) 141
HgaI GACGC 2 cut(s) 222, 352
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 3 cut(s) 117, 358, 511
HinfI GANTC 2 cut(s) 358, 511
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 119, 214
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 416
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 3 cut(s) 117, 358, 511
Kzo9I GATC 4 cut(s) 175, 312, 433, 519
LpnPI CCDG 7 cut(s) 81, 100, 154, 210, 239, 254, 317
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 3 cut(s) 37, 251, 253
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 41, 386
MalI GATC 4 cut(s) 177, 314, 435, 521
MboI GATC 4 cut(s) 175, 312, 433, 519
MboII GAAGA 3 cut(s) 200, 363, 366
MflI RGATCY 1 cut(s) 433
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 2 cut(s) 455, 482
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 102, 211, 277, 310, 481
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 141
NdeII GATC 4 cut(s) 175, 312, 433, 519
NlaIII CATG 3 cut(s) 117, 358, 511
NlaIV GGNNCC 2 cut(s) 139, 404
PceI AGGCCT 1 cut(s) 225
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 1 cut(s) 299
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 139, 404
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 4 cut(s) 175, 312, 433, 519
Sau96I GGNCC 1 cut(s) 137
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 141
SetI ASST 8 cut(s) 14, 73, 186, 368, 385, 415, 419, 450
SfaNI GCATC 3 cut(s) 37, 251, 253
SmlI CTYRAG 2 cut(s) 93, 203
SmoI CTYRAG 2 cut(s) 93, 203
Sse9I AATT 2 cut(s) 455, 482
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 1 cut(s) 406
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 399
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 2 cut(s) 169, 256
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 455, 482
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 3 cut(s) 29, 237, 300
TspRI CASTG 1 cut(s) 468
XspI CTAG 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.