Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0029813

Physical Location & Seq

Genomic Coordinates Reverse (-)

65279228 .. 65281494

Gene Structure 2267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAAGGAATCATTCAACTTACTACAGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAATGCATTTGAGTTCATCAATCAAAACCATGGACTTAGTATTGAGGCTAGTATATCCCTTCAGCTGGATTTTACTGAAGATGGCCCGATCAACCTTTGTTTCGTCGCGTTTGTGGAGAATCAGAAACTGTGGAACGACTCAATAAGATGTGAATTTGGAAGGCGTAGTGCAGAACTTCATGTTCCTTACGGCCAAATCAGTGCTGTGGTATTTATGTACCCAGATCATGTAATATGGCAACTCATGTGCCACTTCTCGCACTCTCCAAGATGCATCAATGTATGGGAGAATGGGAGATACGAGCAATGGATGGCTCGTTATGGACGTGTCTATGAAGAGATCAGCGAGAAGGAGAAGCGCTTCCTAATATTTAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTTTAGACCTTACAAATGAAGAATTCATTGCCTTGAGAAAACGATTCAAGGGTCATGAATGTTCCAGAAAGACCGCTTCTTTCAAGTATGAAAACGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGTAACCCCAGTCAAGGATCAAGGCCGGTACGATGCTGTTGGGCTTTCTCAGCAGTACGTGATAGCCATGGAAGGAGTCACTCAACTTACTACAGATAAACTAATGTCTTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAACGCATTTGAGTTCATCAATCAAAATCATGGACTTGGTACTGAGGCTAATTACCCCTACACTGGTGTTGATGGTACATGCAATGCCCAGAAGGAAGCAAGCCATGCAGCCTCAATAACTGGTCACGAAGATGTGCCTGCAAATAGTGAAAGTTCCCTTCTTAAGGCCGTCGCCAATCAACCCATTTCTGTTGCCATTGATGCTAGTGGATCTGATTTCCAATTCTATTCAAGTGGTGTATTCACAGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGAGTCAGTGATGATGGGACTAAGTATTGGTTGGTCAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGCGCAGGAAGGTCTGTGTGGTATTGCTATGGCAGCCTCTTACCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

440

Amino Acids

48.74

Weight (kDa)

4.64

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 56	2e-13	Papain family cysteine protease
Inhibitor_I29	PF08246	138 - 195	6.7e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	221 - 439	1.9e-69	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029813)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143081
rosa_samantha	Rh2DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1272
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	633
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	2 cut(s)	720, 1093
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	2 cut(s)	266, 581
AcuI	CTGAAG	2 cut(s)	158, 210
AfaI	GTAC	6 cut(s)	332, 725, 752, 916, 952, 1244
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	4 cut(s)	178, 709, 938, 1039
AflII	CTTAAG	1 cut(s)	1037
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	17, 607, 643, 1107
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	5 cut(s)	58, 178, 668, 695, 820
AluI	AGCT	5 cut(s)	58, 178, 668, 695, 820
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	2 cut(s)	720, 1093
AlwNI	CAGNNNCTG	2 cut(s)	241, 671
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	4 cut(s)	196, 304, 718, 1041
ApeKI	GCWGC	3 cut(s)	983, 1268, 1301
ApoI	RAATTY	2 cut(s)	266, 581
ArsI	GACNNNNNNTTYG	6 cut(s)	104, 136, 534, 566, 866, 898
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	474, 1273
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	92, 854, 1244
BaeGI	GKGCMC	1 cut(s)	1225
BbsI	GAAGAC	2 cut(s)	90, 852
BbvI	GCAGC	3 cut(s)	995, 1255, 1313
BccI	CCATC	6 cut(s)	103, 188, 418, 865, 941, 1178
BceAI	ACGGC	2 cut(s)	319, 1028
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	3 cut(s)	162, 1080, 1142
BfmI	CTRYAG	2 cut(s)	24, 786
BfoI	RGCGCY	1 cut(s)	475
BfrI	CTTAAG	1 cut(s)	1037
BisI	GCNGC	3 cut(s)	984, 1269, 1302
BlsI	GCNGC	3 cut(s)	985, 1270, 1303
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	5 cut(s)	374, 396, 514, 718, 1066
BmuI	ACTGGG	1 cut(s)	698
BpiI	GAAGAC	2 cut(s)	90, 852
BpmI	CTGGAG	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	754
BsaJI	CCNNGG	5 cut(s)	88, 142, 762, 850, 1147
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 709, 938, 1039
Bse118I	RCCGGY	1 cut(s)	720
Bse1I	ACTGG	4 cut(s)	683, 704, 943, 1000
Bse3DI	GCAATG	3 cut(s)	425, 585, 964
BseDI	CCNNGG	5 cut(s)	88, 142, 762, 850, 1147
BseGI	GGATG	2 cut(s)	429, 512
BseLI	CCNNNNNNNGG	4 cut(s)	178, 709, 938, 1039
BseMI	GCAATG	3 cut(s)	425, 585, 964
BseMII	CTCAG	3 cut(s)	39, 758, 909
BseNI	ACTGG	4 cut(s)	683, 704, 943, 1000
BseSI	GKGCMC	1 cut(s)	1225
BseXI	GCAGC	3 cut(s)	995, 1255, 1313
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	4 cut(s)	198, 306, 720, 1043
BsiSI	CCGG	1 cut(s)	721
BslFI	GGGAC	1 cut(s)	1201
BslI	CCNNNNNNNGG	4 cut(s)	178, 709, 938, 1039
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	1201
BsmI	GAATGC	1 cut(s)	1257
BsnI	GGCC	4 cut(s)	198, 306, 720, 1043
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp143I	GATC	5 cut(s)	201, 337, 453, 712, 1085
Bsp19I	CCATGG	3 cut(s)	142, 762, 1147
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	4 cut(s)	198, 306, 720, 1043
BspCNI	CTCAG	3 cut(s)	40, 757, 910
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	613
BspPI	GGATC	2 cut(s)	720, 1093
BspTI	CTTAAG	1 cut(s)	1037
BsrDI	GCAATG	3 cut(s)	425, 585, 964
BsrFI	RCCGGY	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	683, 704, 943, 1000
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	5 cut(s)	88, 142, 762, 850, 1147
BssMI	GATC	5 cut(s)	201, 337, 453, 712, 1085
BssT1I	CCWWGG	5 cut(s)	88, 142, 762, 850, 1147
Bst4CI	ACNGT	5 cut(s)	68, 243, 661, 673, 830
Bst6I	CTCTTC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	4 cut(s)	529, 666, 976, 1014
BstDEI	CTNAG	5 cut(s)	48, 149, 744, 918, 1191
BstDSI	CCRYGG	3 cut(s)	142, 762, 1147
BstENI	CCTNNNNNAGG	1 cut(s)	1037
BstF5I	GGATG	2 cut(s)	429, 512
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	2 cut(s)	474, 1273
BstKTI	GATC	5 cut(s)	204, 340, 456, 715, 1088
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	5 cut(s)	201, 337, 453, 712, 1085
BstMWI	GCNNNNNNNGC	4 cut(s)	745, 980, 1076, 1301
BstNSI	RCATGY	1 cut(s)	957
BstSFI	CTRYAG	2 cut(s)	24, 786
BstSLI	GKGCMC	1 cut(s)	1225
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	995, 1255, 1313
BstV2I	GAAGAC	2 cut(s)	90, 852
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
BsuRI	GGCC	4 cut(s)	198, 306, 720, 1043
BtgI	CCRYGG	3 cut(s)	142, 762, 1147
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	429, 512
BtsI	GCAGTG	1 cut(s)	1314
BtsIMutI	CAGTG	4 cut(s)	319, 936, 1183, 1314
Cac8I	GCNNGC	4 cut(s)	529, 666, 976, 1014
CaiI	CAGNNNCTG	2 cut(s)	241, 671
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	2 cut(s)	474, 1273
Cfr10I	RCCGGY	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	6 cut(s)	331, 724, 751, 915, 951, 1243
CviQI	GTAC	6 cut(s)	331, 724, 751, 915, 951, 1243
DdeI	CTNAG	5 cut(s)	48, 149, 744, 918, 1191
DpnI	GATC	5 cut(s)	203, 339, 455, 714, 1087
DpnII	GATC	5 cut(s)	201, 337, 453, 712, 1085
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco130I	CCWWGG	5 cut(s)	88, 142, 762, 850, 1147
Eco47III	AGCGCT	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	158, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	1037
EcoRI	GAATTC	1 cut(s)	581
EcoT14I	CCWWGG	5 cut(s)	88, 142, 762, 850, 1147
EcoT22I	ATGCAT	2 cut(s)	121, 389
ErhI	CCWWGG	5 cut(s)	88, 142, 762, 850, 1147
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FaqI	GGGAC	1 cut(s)	1201
Fnu4HI	GCNGC	3 cut(s)	984, 1269, 1302
FokI	GGATG	2 cut(s)	436, 499
Fsp4HI	GCNGC	3 cut(s)	984, 1269, 1302
FspBI	CTAG	3 cut(s)	162, 1080, 1142
FspI	TGCGCA	1 cut(s)	1272
GlaI	GCGC	2 cut(s)	473, 1272
GluI	GCNGC	3 cut(s)	984, 1269, 1302
GsuI	CTGGAG	1 cut(s)	700
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	4 cut(s)	198, 306, 720, 1043
HapII	CCGG	1 cut(s)	721
HhaI	GCGC	2 cut(s)	474, 1273
Hin6I	GCGC	2 cut(s)	472, 1271
HinP1I	GCGC	2 cut(s)	472, 1271
HincII	GTYRAC	2 cut(s)	64, 826
HindII	GTYRAC	2 cut(s)	64, 826
HinfI	GANTC	7 cut(s)	9, 232, 251, 509, 603, 771, 1173
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	3 cut(s)	92, 854, 1244
Hpy166II	GTNNAC	4 cut(s)	32, 64, 676, 826
Hpy188I	TCNGA	4 cut(s)	49, 237, 811, 1090
Hpy188III	TCNNGA	4 cut(s)	614, 624, 1001, 1207
Hpy8I	GTNNAC	4 cut(s)	32, 64, 676, 826
Hpy99I	CGWCG	2 cut(s)	221, 1049
HpyAV	CCTTC	8 cut(s)	182, 267, 457, 761, 961, 1043, 1232, 1271
HpyCH4III	ACNGT	5 cut(s)	68, 243, 661, 673, 830
HpyCH4IV	ACGT	3 cut(s)	439, 654, 753
HpyCH4V	TGCA	9 cut(s)	119, 284, 387, 527, 957, 983, 1016, 1255, 1319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	745, 980, 1076, 1301
HpyF3I	CTNAG	5 cut(s)	48, 149, 744, 918, 1191
HpySE526I	ACGT	3 cut(s)	439, 654, 753
HspAI	GCGC	2 cut(s)	472, 1271
Kzo9I	GATC	5 cut(s)	201, 337, 453, 712, 1085
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	3 cut(s)	995, 1255, 1313
LweI	GCATC	5 cut(s)	374, 396, 514, 718, 1066
MaeI	CTAG	3 cut(s)	162, 1080, 1142
MaeII	ACGT	3 cut(s)	439, 654, 753
MaeIII	GTNAC	5 cut(s)	655, 697, 772, 998, 1153
MalI	GATC	5 cut(s)	203, 339, 455, 714, 1087
MboI	GATC	5 cut(s)	201, 337, 453, 712, 1085
MboII	GAAGA	7 cut(s)	95, 203, 461, 590, 857, 1016, 1247
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	1 cut(s)	1225
MluCI	AATT	6 cut(s)	266, 542, 557, 581, 925, 1097
MlyI	GAGTC	3 cut(s)	245, 780, 1182
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	6 cut(s)	91, 151, 853, 913, 997, 1315
Mph1103I	ATGCAT	2 cut(s)	121, 389
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	486, 545, 1038
MslI	CAYNNNNRTG	2 cut(s)	1005, 1250
MspA1I	CMGCKG	1 cut(s)	178
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	1 cut(s)	721
Mva1269I	GAATGC	1 cut(s)	1257
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	4 cut(s)	745, 980, 1076, 1301
NcoI	CCATGG	3 cut(s)	142, 762, 1147
NdeII	GATC	5 cut(s)	201, 337, 453, 712, 1085
NmuCI	GTSAC	2 cut(s)	772, 998
NsbI	TGCGCA	1 cut(s)	1272
NsiI	ATGCAT	2 cut(s)	121, 389
NspI	RCATGY	1 cut(s)	957
PagI	TCATGA	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	436
PctI	GAATGC	1 cut(s)	1257
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	9, 232, 509, 603
PkrI	GCNGC	3 cut(s)	985, 1270, 1303
PleI	GAGTC	3 cut(s)	245, 779, 1181
PpsI	GAGTC	3 cut(s)	245, 779, 1181
Ppu21I	YACGTR	1 cut(s)	754
Psp1406I	AACGTT	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	2 cut(s)	241, 671
PsuI	RGATCY	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	6 cut(s)	332, 725, 752, 916, 952, 1244
RsaNI	GTAC	6 cut(s)	331, 724, 751, 915, 951, 1243
RseI	CAYNNNNRTG	2 cut(s)	1005, 1250
SaqAI	TTAA	3 cut(s)	486, 545, 1038
SatI	GCNGC	3 cut(s)	984, 1269, 1302
Sau3AI	GATC	5 cut(s)	201, 337, 453, 712, 1085
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	3 cut(s)	245, 780, 1182
SduI	GDGCHC	1 cut(s)	1225
SfaNI	GCATC	5 cut(s)	374, 396, 514, 718, 1066
SfcI	CTRYAG	2 cut(s)	24, 786
SmiMI	CAYNNNNRTG	2 cut(s)	1005, 1250
SmlI	CTYRAG	2 cut(s)	592, 1037
SmoI	CTYRAG	2 cut(s)	592, 1037
Sse9I	AATT	6 cut(s)	266, 542, 557, 581, 925, 1097
SsiI	CCGC	1 cut(s)	633
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	3 cut(s)	162, 1080, 1142
StyI	CCWWGG	5 cut(s)	88, 142, 762, 850, 1147
TaaI	ACNGT	5 cut(s)	68, 243, 661, 673, 830
TaiI	ACGT	3 cut(s)	442, 657, 756
TasI	AATT	6 cut(s)	266, 542, 557, 581, 925, 1097
TfiI	GAWTC	4 cut(s)	9, 232, 509, 603
Tru1I	TTAA	3 cut(s)	486, 545, 1038
Tru9I	TTAA	3 cut(s)	486, 545, 1038
TscAI	CASTG	4 cut(s)	319, 943, 1183, 1321
TseFI	GTSAC	2 cut(s)	772, 998
TseI	GCWGC	3 cut(s)	983, 1268, 1301
Tsp45I	GTSAC	2 cut(s)	772, 998
TspDTI	ATGAA	8 cut(s)	118, 281, 462, 574, 591, 630, 663, 880
TspRI	CASTG	4 cut(s)	319, 943, 1183, 1321
Vha464I	CTTAAG	1 cut(s)	1037
XagI	CCTNNNNNAGG	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	266, 581
XceI	RCATGY	1 cut(s)	957
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	162, 1080, 1142
Zsp2I	ATGCAT	2 cut(s)	121, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.