Rh2DG498900

GPN-loop GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0022681
Physical Location & Seq
Reverse (-)
71904000 .. 71911951
7952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG498900.1

Sequence Viewer

Length: 1152 bp
ATGGGTTATGCACAGCTAGTTATTGGCCCTGCAGGCAGTGGCAAGTCAACTTATTGCTCCAGTTTGCACCGACACTGTTTAGATAATGGAAGGACTCTACATATTGTTAACTTAGACCCTGCTGCAGAGCATTTTGACTACCCTGTGGCTTTGGATATCAGGGAGATTATTAACTTGGATGATGTTATGGAGGAACTTGGACTGGGTCCCAATGGTGGACTTATTGAAGCTTTCAAAACTGCTGCTGCTGCAGGTATGGATAAGGACGGTGTAGAAGTCAACTTGAGTAGACTAATCACTCAAACATATAAGTTAGCTGAAGAATGTGTGAAAACAAACTACTATGGTAGGCTTTTTAGTTATGCTAAGAAGGCAATACTTGAAATACATATAACGAGCAGAGAAGGAAAGCGCCATGAGGCCTTTTGGCCATCCATCATGATGAAGAAATGGTTTGCAAGCTCATTTTCTTCACTGTTGCTTGCAGTAAATGATCTTTTACCATTCCTATTTGTGTTCTTTCCAATTTCTGACCTGAAACTGTTGAGGATGCTAGCTAATGAAGAGCCAAGTTACCTGAAGTTTGTTTCCAACGCCACTGACTTCCTATCAGAGGACTACTCTGACTACATTATCGTGGGAGCTGGCACTGTTGGGTGCCCCCTAGCTGCGACACTATCATCCAGGTTTCGGGTCCTCTTGCTCGAACAAAGTGGTAGTGCTTGTGGCAGTGAAGCATTGATGACCCATGAAGTGGGGACCAAGACTGGTGGTTCAACACATGATACTTTTGGAAGGAGCTTCACTGGTGCTTGCCTTCTAAAATATGATGCAAGTTCGCTTCATATCAAAGTTGCAGTGCATGCCACTGTGGAAAGACTCCTTTTGGCTTCATTTCCAATCTCAAGCTCATCTGGAGCTTTCAGGAAGTCTGCTGTTGGGGTTATCTTCTGTGACACAATTGGGAAGCATCACCATGTCATGCTAAATAAACATGGGCAAGTGTTTTTGTCTACCAGTGCCATGCCCATGTTTTTGTCTACCAGTGCCATCACCCCTTTCTACAAAGTGGCAATGACCCGAGGCCCGCTTGTCCTATGGTGTATCCATTTCACCCTACTGATCCTGAGATTTGCATGTCAAAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP_bind_1

Protein Analysis

383

Amino Acids

41.99

Weight (kDa)

7.23

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_1 PF03029 7 - 81 8.3e-28 Conserved hypothetical ATP binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022681)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0150091
rosa_samantha Rh2BG490200 Rh2CG463700 Rh2DG498900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 754
AccI GTMKAC 3 cut(s) 289, 1013, 1040
AciI CCGC 1 cut(s) 1088
AclWI GGATC 1 cut(s) 1117
AcoI YGGCCR 1 cut(s) 428
AcuI CTGAAG 2 cut(s) 339, 599
AfiI CCNNNNNNNGG 4 cut(s) 215, 613, 690, 754
AgsI TTSAA 4 cut(s) 227, 235, 383, 777
AjnI CCWGG 1 cut(s) 683
AlwI GGATC 1 cut(s) 1117
Ama87I CYCGRG 1 cut(s) 1080
AoxI GGCC 4 cut(s) 25, 420, 428, 1084
ApeKI GCWGC 5 cut(s) 122, 242, 245, 248, 668
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 5 cut(s) 26, 206, 694, 759, 1085
AsuHPI GGTGA 3 cut(s) 965, 1045, 1105
AsuNHI GCTAGC 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 1080
AvaII GGWCC 3 cut(s) 206, 694, 759
BaeGI GKGCMC 1 cut(s) 662
BalI TGGCCA 1 cut(s) 430
BanI GGYRCC 1 cut(s) 657
BbvI GCAGC 5 cut(s) 109, 229, 232, 235, 655
BccI CCATC 3 cut(s) 439, 443, 1058
BciT130I CCWGG 1 cut(s) 685
BciVI GTATCC 1 cut(s) 1115
BfaI CTAG 3 cut(s) 17, 554, 665
BfmI CTRYAG 3 cut(s) 30, 123, 249
BfoI RGCGCY 1 cut(s) 415
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 1115
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 5 cut(s) 123, 243, 246, 249, 669
BlsI GCNGC 5 cut(s) 124, 244, 247, 250, 670
Bme1390I CCNGG 1 cut(s) 685
Bme18I GGWCC 3 cut(s) 206, 694, 759
BmeT110I CYCGRG 1 cut(s) 1080
BmgT120I GGNCC 5 cut(s) 26, 206, 694, 759, 1085
BmiI GGNNCC 5 cut(s) 207, 208, 659, 695, 760
BmrFI CCNGG 1 cut(s) 685
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 540, 820, 979
BmtI GCTAGC 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 605, 637
BpmI CTGGAG 2 cut(s) 43, 936
BpuEI CTTGAG 2 cut(s) 304, 889
BsaJI CCNNGG 1 cut(s) 1081
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 613, 690, 754
Bse1I ACTGG 6 cut(s) 60, 207, 772, 811, 1017, 1044
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 1081
BseGI GGATG 4 cut(s) 184, 431, 555, 680
BseLI CCNNNNNNNGG 4 cut(s) 215, 613, 690, 754
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 1 cut(s) 1118
BseNI ACTGG 6 cut(s) 60, 207, 772, 811, 1017, 1044
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 5 cut(s) 109, 229, 232, 235, 655
BshFI GGCC 4 cut(s) 27, 422, 430, 1086
BshNI GGYRCC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 1080
BslFI GGGAC 2 cut(s) 192, 772
BslI CCNNNNNNNGG 4 cut(s) 215, 613, 690, 754
BsmFI GGGAC 2 cut(s) 192, 772
BsnI GGCC 4 cut(s) 27, 422, 430, 1086
BsoBI CYCGRG 1 cut(s) 1080
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 2 cut(s) 493, 1122
BspACI CCGC 1 cut(s) 1088
BspANI GGCC 4 cut(s) 27, 422, 430, 1086
BspCNI CTCAG 1 cut(s) 1119
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 5 cut(s) 207, 208, 659, 695, 760
BspMAI CTGCAG 3 cut(s) 34, 127, 253
BspMI ACCTGC 1 cut(s) 242
BspOI GCTAGC 1 cut(s) 557
BspPI GGATC 1 cut(s) 1117
BspQI GCTCTTC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 6 cut(s) 60, 207, 772, 811, 1017, 1044
BssECI CCNNGG 1 cut(s) 1081
BssMI GATC 2 cut(s) 493, 1122
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 6 cut(s) 77, 269, 477, 543, 652, 871
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 1 cut(s) 863
BstC8I GCNNGC 8 cut(s) 34, 460, 483, 555, 646, 814, 864, 1088
BstDEI CTNAG 3 cut(s) 112, 366, 1127
BstENI CCTNNNNNAGG 1 cut(s) 611
BstF5I GGATG 4 cut(s) 184, 431, 555, 680
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 2 cut(s) 496, 1125
BstMBI GATC 2 cut(s) 493, 1122
BstMWI GCNNNNNNNGC 4 cut(s) 33, 248, 371, 863
BstNI CCWGG 1 cut(s) 685
BstNSI RCATGY 2 cut(s) 866, 1140
BstSCI CCNGG 1 cut(s) 683
BstSFI CTRYAG 3 cut(s) 30, 123, 249
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 5 cut(s) 109, 229, 232, 235, 655
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 4 cut(s) 27, 422, 430, 1086
BtsCI GGATG 4 cut(s) 184, 431, 555, 680
BtsI GCAGTG 3 cut(s) 43, 736, 864
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 8 cut(s) 34, 460, 483, 555, 646, 814, 864, 1088
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 5 cut(s) 26, 206, 694, 759, 1085
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
DdeI CTNAG 3 cut(s) 112, 366, 1127
DpnI GATC 2 cut(s) 495, 1124
DpnII GATC 2 cut(s) 493, 1122
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 422
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 3 cut(s) 206, 694, 759
Eco57I CTGAAG 2 cut(s) 339, 599
Eco88I CYCGRG 1 cut(s) 1080
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoO109I RGGNCCY 2 cut(s) 206, 694
EcoRII CCWGG 1 cut(s) 683
EcoRV GATATC 1 cut(s) 157
FaqI GGGAC 2 cut(s) 192, 772
FauI CCCGC 1 cut(s) 1095
FblI GTMKAC 3 cut(s) 289, 1013, 1040
Fnu4HI GCNGC 5 cut(s) 123, 243, 246, 249, 669
FokI GGATG 4 cut(s) 191, 418, 562, 667
Fsp4HI GCNGC 5 cut(s) 123, 243, 246, 249, 669
FspBI CTAG 3 cut(s) 17, 554, 665
GlaI GCGC 1 cut(s) 413
GluI GCNGC 5 cut(s) 123, 243, 246, 249, 669
GsuI CTGGAG 2 cut(s) 43, 936
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 4 cut(s) 27, 422, 430, 1086
HhaI GCGC 1 cut(s) 414
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 3 cut(s) 48, 109, 280
HindII GTYRAC 3 cut(s) 48, 109, 280
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 2 cut(s) 94, 879
HpaI GTTAAC 1 cut(s) 109
HphI GGTGA 3 cut(s) 965, 1045, 1105
Hpy166II GTNNAC 7 cut(s) 48, 109, 218, 280, 290, 1014, 1041
Hpy188I TCNGA 3 cut(s) 532, 613, 625
Hpy188III TCNNGA 4 cut(s) 439, 915, 925, 1126
Hpy8I GTNNAC 7 cut(s) 48, 109, 218, 280, 290, 1014, 1041
HpyAV CCTTC 5 cut(s) 84, 364, 398, 789, 827
HpyCH4III ACNGT 6 cut(s) 77, 269, 477, 543, 652, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 248, 371, 863
HpyF3I CTNAG 3 cut(s) 112, 366, 1127
HspAI GCGC 1 cut(s) 412
KflI GGGWCCC 1 cut(s) 206
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 493, 1122
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 4 cut(s) 62, 641, 798, 917
Lsp1109I GCAGC 5 cut(s) 109, 229, 232, 235, 655
LweI GCATC 3 cut(s) 540, 820, 979
MaeI CTAG 3 cut(s) 17, 554, 665
MaeIII GTNAC 2 cut(s) 572, 953
MalI GATC 2 cut(s) 495, 1124
MboI GATC 2 cut(s) 493, 1122
MboII GAAGA 5 cut(s) 332, 457, 462, 575, 940
MfeI CAATTG 1 cut(s) 960
MhlI GDGCHC 1 cut(s) 662
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 2 cut(s) 525, 960
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 2 cut(s) 88, 873
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 6 cut(s) 184, 412, 540, 607, 707, 1076
Mox20I TGGCCA 1 cut(s) 430
MscI TGGCCA 1 cut(s) 430
MseI TTAA 2 cut(s) 108, 171
MslI CAYNNNNRTG 4 cut(s) 440, 635, 975, 1028
Msp20I TGGCCA 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 685
MunI CAATTG 1 cut(s) 960
MvaI CCWGG 1 cut(s) 685
MwoI GCNNNNNNNGC 4 cut(s) 33, 248, 371, 863
NdeII GATC 2 cut(s) 493, 1122
NheI GCTAGC 1 cut(s) 553
NlaIV GGNNCC 5 cut(s) 207, 208, 659, 695, 760
NmuCI GTSAC 1 cut(s) 953
NspI RCATGY 2 cut(s) 866, 1140
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 438
PceI AGGCCT 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 558
PflFI GACNNNGTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 5 cut(s) 124, 244, 247, 250, 670
PleI GAGTC 2 cut(s) 88, 873
PpsI GAGTC 2 cut(s) 88, 873
PpuMI RGGWCCY 2 cut(s) 206, 694
Psp5II RGGWCCY 2 cut(s) 206, 694
Psp6I CCWGG 1 cut(s) 683
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 5 cut(s) 207, 208, 659, 695, 760
PspPI GGNCC 5 cut(s) 26, 206, 694, 759, 1085
PspPPI RGGWCCY 2 cut(s) 206, 694
PstI CTGCAG 3 cut(s) 34, 127, 253
PsyI GACNNNGTC 1 cut(s) 204
RseI CAYNNNNRTG 4 cut(s) 440, 635, 975, 1028
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 108, 171
SatI GCNGC 5 cut(s) 123, 243, 246, 249, 669
Sau3AI GATC 2 cut(s) 493, 1122
Sau96I GGNCC 5 cut(s) 26, 206, 694, 759, 1085
SbfI CCTGCAGG 1 cut(s) 34
SchI GAGTC 2 cut(s) 88, 873
ScrFI CCNGG 1 cut(s) 685
SdaI CCTGCAGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 3 cut(s) 540, 820, 979
SfcI CTRYAG 3 cut(s) 30, 123, 249
SinI GGWCC 3 cut(s) 206, 694, 759
SmiMI CAYNNNNRTG 4 cut(s) 440, 635, 975, 1028
SmlI CTYRAG 2 cut(s) 283, 904
SmoI CTYRAG 2 cut(s) 283, 904
SphI GCATGC 1 cut(s) 866
Sse8387I CCTGCAGG 1 cut(s) 34
Sse9I AATT 2 cut(s) 525, 960
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 1088
SspMI CTAG 3 cut(s) 17, 554, 665
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 683
TaaI ACNGT 6 cut(s) 77, 269, 477, 543, 652, 871
TaqI TCGA 1 cut(s) 705
TasI AATT 2 cut(s) 525, 960
Tru1I TTAA 2 cut(s) 108, 171
Tru9I TTAA 2 cut(s) 108, 171
TseFI GTSAC 1 cut(s) 953
TseI GCWGC 5 cut(s) 122, 242, 245, 248, 668
Tsp45I GTSAC 1 cut(s) 953
TspDTI ATGAA 5 cut(s) 458, 576, 765, 833, 882
Tth111I GACNNNGTC 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 3 cut(s) 206, 694, 759
XagI CCTNNNNNAGG 1 cut(s) 611
XceI RCATGY 2 cut(s) 866, 1140
XmiI GTMKAC 3 cut(s) 289, 1013, 1040
XspI CTAG 3 cut(s) 17, 554, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.