Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0031276

Physical Location & Seq

Genomic Coordinates Reverse (-)

90140513 .. 90142500

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG682600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGGCGACGACGAAGAGCTTTGAATTCTCCGATTTAAAGCCACCAAAACCCACTTCAAAAGGCGAAGAACAAACCCGTTTGCAGCCTGGTCGGTATCCGAACCCGGCCAGTCCTCCAATTCTCTCACTGAGTAGTGACTACCCATCATTTTTGTGTGAAATTTGCGCCGACGATAAGTTTGGGTACCCATGTTTCCCAATCGAGAATTGCAACCATATCTTTTGCGCTGATTGTACGATCAACTACATCGATTCGAAGCTTGAAGAAAAAGAACCCAACATTCGGTGCTTTGTTCCGGGCTGCAAAGGTTTGCTGGAGCCCGAGTACTACGTACCGCTCGGTTCTGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

4.75

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031276)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003649.1_g000027
rosa_samantha	Rh2DG682600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	340
AciI	CCGC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	26, 162
AfaI	GTAC	4 cut(s)	188, 238, 329, 336
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	26, 60, 266
AjnI	CCWGG	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	2 cut(s)	21, 262
AluI	AGCT	2 cut(s)	21, 262
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	85, 303
ApoI	RAATTY	2 cut(s)	26, 162
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	170, 230
AsuC2I	CCSGG	2 cut(s)	107, 300
AsuII	TTCGAA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	97, 290
BccI	CCATC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	107, 300
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	2 cut(s)	86, 304
BlsI	GCNGC	2 cut(s)	87, 305
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	90, 107, 300
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	188, 321
BmrFI	CCNGG	3 cut(s)	90, 107, 300
BpmI	CTGGAG	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	257
BpuMI	CCSGG	2 cut(s)	107, 300
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	97, 290
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	107, 299
BslI	CCNNNNNNNGG	1 cut(s)	285
BsnI	GGCC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	188, 321
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	170, 230
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	88, 105, 298
BstSNI	TACGTA	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	97, 290
Bsu15I	ATCGAT	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	170, 230
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	4 cut(s)	187, 237, 328, 335
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	7 cut(s)	21, 43, 88, 110, 262, 303, 322
CviKI_1	RGCY	7 cut(s)	21, 43, 88, 110, 262, 303, 322
CviQI	GTAC	4 cut(s)	187, 237, 328, 335
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco105I	TACGTA	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	1 cut(s)	195
FaiI	YATR	2 cut(s)	193, 219
FatI	CATG	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	86, 304
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	86, 304
GlaI	GCGC	2 cut(s)	169, 229
GluI	GCNGC	2 cut(s)	86, 304
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	107, 299
HhaI	GCGC	2 cut(s)	170, 230
Hin1II	CATG	1 cut(s)	195
Hin6I	GCGC	2 cut(s)	168, 228
HinP1I	GCGC	2 cut(s)	168, 228
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	107, 299
Hpy188I	TCNGA	3 cut(s)	34, 102, 349
Hpy188III	TCNNGA	1 cut(s)	205
Hpy99I	CGWCG	3 cut(s)	13, 16, 176
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	85, 213, 306
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	195
HspAI	GCGC	2 cut(s)	168, 228
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	6 cut(s)	75, 102, 120, 124, 302, 312
Lsp1109I	GCAGC	2 cut(s)	97, 290
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	242
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	1 cut(s)	240
MboII	GAAGA	3 cut(s)	28, 80, 278
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	26, 120, 162, 208
MnlI	CCTC	1 cut(s)	126
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	154
MspI	CCGG	2 cut(s)	107, 299
MspR9I	CCNGG	3 cut(s)	90, 107, 300
MvaI	CCWGG	1 cut(s)	90
NciI	CCSGG	2 cut(s)	107, 300
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	2 cut(s)	188, 321
NmuCI	GTSAC	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	87, 305
Ppu21I	YACGTR	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	188, 321
RsaI	GTAC	4 cut(s)	188, 238, 329, 336
RsaNI	GTAC	4 cut(s)	187, 237, 328, 335
RseI	CAYNNNNRTG	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	86, 304
Sau3AI	GATC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	90, 107, 300
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	4 cut(s)	23, 264, 313, 336
SfuI	TTCGAA	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	154
SnaBI	TACGTA	1 cut(s)	334
Sse9I	AATT	4 cut(s)	26, 120, 162, 208
SsiI	CCGC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	88, 105, 298
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	204, 252, 257
TasI	AATT	4 cut(s)	26, 120, 162, 208
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	85, 303
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	2 cut(s)	26, 162
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.