Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0024923

Physical Location & Seq

Genomic Coordinates Reverse (-)

12603417 .. 12603711

Gene Structure 295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 226 bp

ATGCGGAAAGCAGGTTACAAGCCCAATGATTATTACCTTGAGCAACTAATTGAGGAGTGGTGTGAAGGAGTTATACAAGACAGCAGCCCGAAACAAGGCGAGTTCAGTTACTGGGACAAAGCGGACATAGGGAGATCTGGAAGTCTGCTTCTTCAAAAAGTTGCAGAACACTTGCAACGGCATATTGCTGACACTTTAGCAGTTCATCTTCAAGGACTTACAACAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

75

Amino Acids

8.58

Weight (kDa)

5.46

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024923)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0468351
rosa_samantha	Rh3AG142700 Rh3BG165100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AciI	CCGC	2 cut(s)	4, 122
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	155, 212
AlwNI	CAGNNNCTG	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbvI	GCAGC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	2
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	4, 122
BspMI	ACCTGC	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	134
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	2
CaiI	CAGNNNCTG	1 cut(s)	111
CviJI	RGCY	2 cut(s)	22, 87
CviKI_1	RGCY	2 cut(s)	22, 87
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
FaiI	YATR	3 cut(s)	74, 128, 183
FaqI	GGGAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	164, 175
Kzo9I	GATC	1 cut(s)	134
LpnPI	CCDG	2 cut(s)	97, 123
Lsp1109I	GCAGC	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	14, 107
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	143, 200
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	1 cut(s)	46
NdeII	GATC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	134
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	134
SetI	ASST	2 cut(s)	16, 39
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	4, 122
TasI	AATT	1 cut(s)	48
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.