Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0023055

Physical Location & Seq

Genomic Coordinates Reverse (-)

15126915 .. 15127442

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGATTTCACGGCGCTCCGGGCGGCGGTGGAGGAGGCGGAGCTAGTCGACGCCCACGCCCACAACATCGTCGCCGTCGACTCCTCCTTCCCCTTCATCAGTGCCTTCTCCGAAGCCAACGCCGACGCCTTATCCTACGCACCCCATTCCCTCTCCTTCAAGAGAAGTTTGAAGGAGGTTGCGGAGCTTTACGGCTGTGAGAAGACCTTGGATGCGGTTGAGGAGCATCGGAGAGTCGCCGGATTAGAGGCGATTAGCTCCCGGTGCTTTGAGGCTGCGAGAATCTCCGCATTGCTTATTGATGATGGACTGAGGCTGGACAAAATGCATGACGTAGATTGGCACAAGAGTTTCGCGCCTGTGGTTGGGAGGATTCTCAGGATTGAGTTCCTGGCTGAGCAGATTCTTAATGAGGTGGAGGCTCCTTTATTGTGCTCTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

148

Amino Acids

16.37

Weight (kDa)

4.81

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023055)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000839.1_g000012 Rmu_sc0016835.1_g000001
rosa_samantha	Rh3AG164100 Rh3CG179600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 78
AccII	CGCG	1 cut(s)	356
AciI	CCGC	6 cut(s)	23, 26, 38, 182, 215, 288
AcyI	GRCGYC	2 cut(s)	51, 126
AfiI	CCNNNNNNNGG	2 cut(s)	25, 365
AgsI	TTSAA	2 cut(s)	160, 172
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	43, 187, 258
AluI	AGCT	3 cut(s)	43, 187, 258
Alw21I	GWGCWC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	16, 358
AsuC2I	CCSGG	2 cut(s)	20, 262
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	3 cut(s)	27, 59, 208
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	2 cut(s)	20, 262
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	2 cut(s)	24, 276
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	2 cut(s)	25, 277
Bme1390I	CCNGG	3 cut(s)	20, 262, 392
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	3 cut(s)	20, 262, 392
BmsI	GCATC	2 cut(s)	202, 235
BpiI	GAAGAC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuMI	CCSGG	2 cut(s)	20, 262
BsaHI	GRCGYC	2 cut(s)	51, 126
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 365
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	25, 365
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	302, 387, 391
BseRI	GAGGAG	3 cut(s)	47, 73, 236
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	3 cut(s)	19, 240, 262
BslI	CCNNNNNNNGG	2 cut(s)	25, 365
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	6 cut(s)	23, 26, 38, 182, 215, 288
BspCNI	CTCAG	3 cut(s)	303, 388, 390
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	207
BssNI	GRCGYC	2 cut(s)	51, 126
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	392
BstACI	GRCGYC	2 cut(s)	51, 126
BstDEI	CTNAG	3 cut(s)	311, 377, 396
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 264
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	18, 260, 390
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	2 cut(s)	16, 358
CseI	GACGC	2 cut(s)	59, 134
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	9 cut(s)	43, 116, 187, 195, 258, 275, 316, 395, 422
CviKI_1	RGCY	9 cut(s)	43, 116, 187, 195, 258, 275, 316, 395, 422
DdeI	CTNAG	3 cut(s)	311, 377, 396
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	332
FaiI	YATR	1 cut(s)	330
FatI	CATG	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	48, 78
Fnu4HI	GCNGC	2 cut(s)	24, 276
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	24, 276
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	15, 357
GluI	GCNGC	2 cut(s)	24, 276
HaeII	RGCGCY	1 cut(s)	17
HapII	CCGG	3 cut(s)	19, 240, 262
HgaI	GACGC	2 cut(s)	59, 134
HhaI	GCGC	2 cut(s)	16, 358
Hin1I	GRCGYC	2 cut(s)	51, 126
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	2 cut(s)	14, 356
HinP1I	GCGC	2 cut(s)	14, 356
HincII	GTYRAC	2 cut(s)	49, 79
HindII	GTYRAC	2 cut(s)	49, 79
HinfI	GANTC	5 cut(s)	80, 234, 282, 373, 403
HpaII	CCGG	3 cut(s)	19, 240, 262
Hpy166II	GTNNAC	2 cut(s)	49, 79
Hpy188I	TCNGA	3 cut(s)	112, 231, 439
Hpy188III	TCNNGA	2 cut(s)	160, 379
Hpy8I	GTNNAC	2 cut(s)	49, 79
Hpy99I	CGWCG	4 cut(s)	53, 74, 80, 128
HpyAV	CCTTC	5 cut(s)	97, 103, 115, 166, 166
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 264
HpyF3I	CTNAG	3 cut(s)	311, 377, 396
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	2 cut(s)	51, 126
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	2 cut(s)	14, 356
LmnI	GCTCC	6 cut(s)	21, 40, 184, 223, 263, 427
LpnPI	CCDG	8 cut(s)	32, 253, 275, 302, 364, 372, 377, 404
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	202, 235
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	333
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	74, 243
Mph1103I	ATGCAT	1 cut(s)	330
MseI	TTAA	1 cut(s)	408
MspI	CCGG	3 cut(s)	19, 240, 262
MspR9I	CCNGG	3 cut(s)	20, 262, 392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	20, 264
NciI	CCSGG	2 cut(s)	20, 262
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	282, 373, 403
PkrI	GCNGC	2 cut(s)	25, 277
PleI	GAGTC	2 cut(s)	74, 242
PpsI	GAGTC	2 cut(s)	74, 242
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	423
SalI	GTCGAC	2 cut(s)	47, 77
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	2 cut(s)	24, 276
SchI	GAGTC	2 cut(s)	74, 243
ScrFI	CCNGG	3 cut(s)	20, 262, 392
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	45, 180, 189, 209, 260, 336, 417
SfaNI	GCATC	2 cut(s)	202, 235
SsiI	CCGC	6 cut(s)	23, 26, 38, 182, 215, 288
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	18, 260, 390
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	48, 78
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	282, 373, 403
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	48, 78
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.