Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0029973

Physical Location & Seq

Genomic Coordinates Forward (+)

34009004 .. 34010719

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG286900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTGGCGTGTCTTGTTGATGGTAACATAATCACAGGGGCTACGTATGAAGACCATCCCAAGTTCTTTAGGGCTTTTTTGAAGGCACTAGGAGGCGACATAACTGGTTCAGATAGAAGAGTCCTAATTCTCTGTGGAGACTTTATGGAAGATTATAAGGTAGCTGTGCCTTTTCAGTCGCTTCAAGCTCTAGGGGGCCACGTCGATGGATCTTGCCCCAAGAAGAAAGCTGGTTATATTTGTGCAACTGCTGTCCATGATTTTGAAGGTGATCAAACCTACATTGAGAAGCCAGGACATAATTTCACTTTAACAGCTAATTTTGAAGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

111

Amino Acids

12.03

Weight (kDa)

5.41

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488171
rosa_samantha	Rh3AG286900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AclWI	GGATC	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	82, 185, 266, 326
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	164, 188, 230, 317
AluI	AGCT	4 cut(s)	164, 188, 230, 317
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	3 cut(s)	14, 63, 200
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	89, 191
Bme1390I	CCNGG	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	209, 271
BspANI	GGCC	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	209, 271
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	212, 274
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	209, 271
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSNI	TACGTA	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	8 cut(s)	41, 74, 164, 188, 198, 230, 292, 317
CviKI_1	RGCY	8 cut(s)	41, 74, 164, 188, 198, 230, 292, 317
DpnI	GATC	2 cut(s)	211, 273
DpnII	GATC	2 cut(s)	209, 271
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	260
FaiI	YATR	8 cut(s)	29, 48, 101, 146, 156, 237, 258, 300
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	271
FokI	GGATG	1 cut(s)	42
FspBI	CTAG	2 cut(s)	89, 191
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	1 cut(s)	120
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	76, 260, 320
HpyCH4IV	ACGT	2 cut(s)	44, 201
HpyCH4V	TGCA	1 cut(s)	245
HpySE526I	ACGT	2 cut(s)	44, 201
Hsp92II	CATG	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	209, 271
LpnPI	CCDG	5 cut(s)	21, 90, 216, 279, 306
MaeI	CTAG	2 cut(s)	89, 191
MaeII	ACGT	2 cut(s)	44, 201
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	211, 273
MboI	GATC	2 cut(s)	209, 271
MboII	GAAGA	4 cut(s)	62, 129, 161, 235
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	3 cut(s)	126, 301, 319
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	209, 271
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	209, 271
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	9 cut(s)	47, 162, 166, 190, 204, 232, 271, 281, 319
SmiMI	CAYNNNNRTG	1 cut(s)	204
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	3 cut(s)	126, 301, 319
SspMI	CTAG	2 cut(s)	89, 191
StyD4I	CCNGG	1 cut(s)	292
TaiI	ACGT	2 cut(s)	47, 204
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	126, 301, 319
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	63
XspI	CTAG	2 cut(s)	89, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.