Rh3AG288900

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0029970
Physical Location & Seq
Forward (+)
34584570 .. 34585049
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG288900.1

Sequence Viewer

Length: 480 bp
ATGTTTTCACTAGAGTCAGATGAAATCTGCGAGAACTTGAATCGCATTCCTCTGGACATGGAATGTAATGGAGGTGAACTAATTACAACTGCAGTTTTTAGACATTTTGGCGGATATGTGGCAAATGGATTGATAAACGAGTCCCTTCAGTTTCTCATAGTTGTCAAAAGGGTCATGGCAGTGAGTTCGTCGCTGTGGAGATACCTTGACGTTGTCATATATATTAAGAAGCATTTTGAAATATCGAAAGATGCACGACAGTTTTACAATCTATCCCCACCTGGAGAAATTGATGAAGCCTGCTCTTCTGCATCAGGAACCAAGGAGGCCAAAGAAACCAATTCATTTAGAGAAAATCTTGTGACTGAGCCCAAAATATGCGCATCCGTGATGCTATATTTTGATTATTTTCCTCACCATATAGTGGTGTCTGATGAAATATTATTTGTGAACAAGTTTCAAACAGATCTTGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

159

Amino Acids

18.13

Weight (kDa)

4.9

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029970)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0488671
rosa_samantha Rh3AG288900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 424
AciI CCGC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 3 cut(s) 40, 239, 461
AjnI CCWGG 1 cut(s) 280
AoxI GGCC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 86, 407
BanII GRGCYC 1 cut(s) 372
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 1 cut(s) 282
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 4 cut(s) 241, 320, 381, 392
BpmI CTGGAG 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 357
BshFI GGCC 1 cut(s) 329
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 1 cut(s) 466
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 1 cut(s) 469
BstMBI GATC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 383
CviAII CATG 2 cut(s) 58, 175
CviJI RGCY 3 cut(s) 299, 329, 370
CviKI_1 RGCY 3 cut(s) 299, 329, 370
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 61, 178
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 57, 174
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 372
FspAI RTGCGCAY 1 cut(s) 382
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 382
GlaI GCGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 329
HhaI GCGC 1 cut(s) 383
Hin1II CATG 2 cut(s) 61, 178
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 3 cut(s) 14, 40, 140
HphI GGTGA 2 cut(s) 86, 407
Hpy166II GTNNAC 2 cut(s) 77, 451
Hpy188I TCNGA 2 cut(s) 19, 433
Hpy188III TCNNGA 2 cut(s) 53, 315
Hpy8I GTNNAC 2 cut(s) 77, 451
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 92, 254, 311
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 61, 178
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 1 cut(s) 466
LguI GCTCTTC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 38, 267, 294, 300, 313
LweI GCATC 4 cut(s) 241, 320, 381, 392
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 1 cut(s) 297
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 81, 288, 340
MlyI GAGTC 2 cut(s) 23, 149
MnlI CCTC 4 cut(s) 60, 65, 319, 423
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 282
NdeII GATC 1 cut(s) 466
NlaIII CATG 2 cut(s) 61, 178
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 361
NsbI TGCGCA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 310
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 424
PleI GAGTC 2 cut(s) 22, 148
PpsI GAGTC 2 cut(s) 22, 148
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 2 cut(s) 23, 149
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 372
SetI ASST 4 cut(s) 76, 207, 213, 283
SfaNI GCATC 4 cut(s) 241, 320, 381, 392
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 3 cut(s) 81, 288, 340
SsiI CCGC 1 cut(s) 111
SspI AATATT 1 cut(s) 441
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 245
TasI AATT 3 cut(s) 81, 288, 340
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 4 cut(s) 36, 309, 333, 450
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 424
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.