Rh3BG350000

NADH dehydrogenase (quinone) activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0030547
Physical Location & Seq
Forward (+)
40498130 .. 40498468
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG350000.1

Sequence Viewer

Length: 339 bp
ATGCCGTTTAGTACTTCAGGTGCTTCTGTTGCGTATAATGTAAATCCCGTAGCGGATCAATTCCAACGAGCCTTTCAAACTAGTACTTTTTGTAATCGACTCTATAGCTTCTTCAATAAATGCTGGTTCTTCGATCAAGTTTTGAATGACTTTCTAGTCAGATCGTTCCTGCGTTTCGGATATGAAGTCTCATTCGAAGCTTTAGACAAAGGTGCTATTGAGATATTGGGCCCTTATGGTATCTCGTACACATTCCGACGATTGGCCGAGCGAATAAGTCAACTTCAAAGTGGATTTGTGGTGCGAAGAGTGCGTTATGACCTGTGGCCGCCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.05

Weight (kDa)

9.1

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADH5_C PF06455 7 - 99 7.3e-09 NADH dehydrogenase subunit 5 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030547)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0499151
rosa_samantha Rh3BG350000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AciI CCGC 2 cut(s) 53, 329
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 2 cut(s) 264, 326
AfaI GTAC 3 cut(s) 13, 85, 248
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 4 cut(s) 77, 115, 145, 287
AhlI ACTAGT 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 2 cut(s) 108, 200
AluI AGCT 2 cut(s) 108, 200
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 63
AoxI GGCC 3 cut(s) 229, 264, 326
ApaI GGGCCC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 229, 230
AsuII TTCGAA 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 193
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 3 cut(s) 81, 155, 337
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
BmcAI AGTACT 2 cut(s) 13, 85
BmgT120I GGNCC 2 cut(s) 229, 230
BmiI GGNNCC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 233
BshFI GGCC 3 cut(s) 231, 266, 328
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 3 cut(s) 231, 266, 328
Bsp119I TTCGAA 1 cut(s) 195
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 55, 133, 161
BspACI CCGC 2 cut(s) 53, 329
BspANI GGCC 3 cut(s) 231, 266, 328
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 195
BssMI GATC 3 cut(s) 55, 133, 161
Bst6I CTCTTC 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 58, 136, 164
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 3 cut(s) 55, 133, 161
BstMWI GCNNNNNNNGC 2 cut(s) 29, 310
BstSFI CTRYAG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 233
BsuRI GGCC 3 cut(s) 231, 266, 328
Cac8I GCNNGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 229, 230
Csp6I GTAC 3 cut(s) 12, 84, 247
CviJI RGCY 6 cut(s) 71, 108, 200, 231, 266, 328
CviKI_1 RGCY 6 cut(s) 71, 108, 200, 231, 266, 328
CviQI GTAC 3 cut(s) 12, 84, 247
DpnI GATC 3 cut(s) 57, 135, 163
DpnII GATC 3 cut(s) 55, 133, 161
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 2 cut(s) 264, 326
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 233
FaiI YATR 5 cut(s) 36, 105, 183, 237, 318
Fnu4HI GCNGC 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 3 cut(s) 81, 155, 337
GluI GCNGC 1 cut(s) 329
HaeIII GGCC 3 cut(s) 231, 266, 328
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 249, 281
Hpy188I TCNGA 3 cut(s) 161, 179, 257
Hpy8I GTNNAC 2 cut(s) 249, 281
Hpy99I CGWCG 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 310
Kzo9I GATC 3 cut(s) 55, 133, 161
LpnPI CCDG 4 cut(s) 3, 109, 182, 335
MaeI CTAG 3 cut(s) 81, 155, 337
MalI GATC 3 cut(s) 57, 135, 163
MboI GATC 3 cut(s) 55, 133, 161
MboII GAAGA 3 cut(s) 103, 121, 318
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 88, 280
MwoI GCNNNNNNNGC 2 cut(s) 29, 310
NdeII GATC 3 cut(s) 55, 133, 161
NlaIV GGNNCC 1 cut(s) 231
NmeAIII GCCGAG 1 cut(s) 292
NspV TTCGAA 1 cut(s) 195
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 231
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 229, 230
RsaI GTAC 3 cut(s) 13, 85, 248
RsaNI GTAC 3 cut(s) 12, 84, 247
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 3 cut(s) 55, 133, 161
Sau96I GGNCC 2 cut(s) 229, 230
ScaI AGTACT 2 cut(s) 13, 85
SchI GAGTC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 233
SetI ASST 5 cut(s) 22, 110, 202, 214, 324
SfcI CTRYAG 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 195
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 1 cut(s) 59
SsiI CCGC 2 cut(s) 53, 329
SspMI CTAG 3 cut(s) 81, 155, 337
TaqI TCGA 3 cut(s) 97, 132, 195
TasI AATT 1 cut(s) 59
TatI WGTACW 2 cut(s) 11, 83
TauI GCSGC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 198
XspI CTAG 3 cut(s) 81, 155, 337
ZrmI AGTACT 2 cut(s) 13, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.