Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0031259

Physical Location & Seq

Genomic Coordinates Forward (+)

10674462 .. 10675238

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG130300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACGTCATCAAGACGCAGCAAATATCGGCGAGGTCGATCGAGAAGGTGATAGTTCACCCGCTGGTGCTACTCAGCATCGTCGACAACTACAACCGAGTCGCCAAGGACACTCGCAAACGAGTCGTCGGAGTCCTGCTCGGAAGCACTTACAAAGGCGTCGTCGACGTCTCCAACAGCTACGCAGTGCCTTTTGAAGAAGATGATAAAGACCCTAGCATTTGGTTTCTTGACCACAACTACCATGAAGCAATGTACTCTATGTTCAAGAGAATCAATGCAAAGGAGCACGTCGTAGGTTGGTATAGTACGGGGCCGAAACTACGAGAGAATGATCTTGATGTTCACAGCTTATTCCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

121

Amino Acids

13.96

Weight (kDa)

7.02

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	13 - 120	1.3e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003267.1_g000027
rosa_samantha	Rh3CG130300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	9, 171
AccI	GTMKAC	2 cut(s)	84, 165
AciI	CCGC	1 cut(s)	62
AcyI	GRCGYC	3 cut(s)	6, 159, 168
AfaI	GTAC	2 cut(s)	257, 310
AgsI	TTSAA	2 cut(s)	197, 268
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	2 cut(s)	180, 351
AluI	AGCT	2 cut(s)	180, 351
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	19
ArsI	GACNNNNNNTTYG	4 cut(s)	111, 143, 147, 179
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	50, 61
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BsaHI	GRCGYC	3 cut(s)	6, 159, 168
BsaJI	CCNNGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	39, 334
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	39, 334
BssNI	GRCGYC	3 cut(s)	6, 159, 168
BssT1I	CCWWGG	1 cut(s)	105
BstACI	GRCGYC	3 cut(s)	6, 159, 168
BstDEI	CTNAG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	42, 337
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	39, 334
BstMCI	CGRYCG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	316
BtrI	CACGTC	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	2 cut(s)	25, 148
Csp6I	GTAC	2 cut(s)	256, 309
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	3 cut(s)	180, 316, 351
CviKI_1	RGCY	3 cut(s)	180, 316, 351
CviQI	GTAC	2 cut(s)	256, 309
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	41, 336
DpnII	GATC	2 cut(s)	39, 334
Eco130I	CCWWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	248
FaiI	YATR	3 cut(s)	246, 263, 306
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	2 cut(s)	84, 165
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	2 cut(s)	25, 148
Hin1I	GRCGYC	3 cut(s)	6, 159, 168
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HinfI	GANTC	4 cut(s)	99, 123, 132, 273
HphI	GGTGA	2 cut(s)	50, 61
Hpy166II	GTNNAC	4 cut(s)	58, 85, 166, 346
Hpy188I	TCNGA	2 cut(s)	131, 143
Hpy188III	TCNNGA	5 cut(s)	13, 43, 230, 268, 338
Hpy8I	GTNNAC	4 cut(s)	58, 85, 166, 346
Hpy99I	CGWCG	6 cut(s)	86, 131, 164, 167, 170, 296
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	3 cut(s)	6, 168, 291
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	3 cut(s)	6, 168, 291
Hsp92I	GRCGYC	3 cut(s)	6, 159, 168
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	39, 334
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	2 cut(s)	50, 149
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	3 cut(s)	6, 168, 291
MalI	GATC	2 cut(s)	41, 336
MboI	GATC	2 cut(s)	39, 334
MboII	GAAGA	2 cut(s)	209, 212
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	108, 132, 141
MmeI	TCCRAC	2 cut(s)	109, 198
MnlI	CCTC	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	64
NdeII	GATC	2 cut(s)	39, 334
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	3 cut(s)	107, 131, 140
PpsI	GAGTC	3 cut(s)	107, 131, 140
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	248, 280
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	257, 310
RsaNI	GTAC	2 cut(s)	256, 309
SalI	GTCGAC	2 cut(s)	83, 164
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	39, 334
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	108, 132, 141
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	9, 38, 51, 171, 182, 294, 301, 353
SfaNI	GCATC	1 cut(s)	87
SgrDI	CGTCGACG	1 cut(s)	164
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	3 cut(s)	9, 171, 294
TaqI	TCGA	4 cut(s)	38, 42, 84, 165
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	192
XmiI	GTMKAC	2 cut(s)	84, 165
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	2 cut(s)	7, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.