Rh3CG147700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0029943
Physical Location & Seq
Forward (+)
12331867 .. 12332542
676 bp
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UTR
Exon/CDS
Intron
Rh3CG147700.1

Sequence Viewer

Length: 270 bp
ATGGTAAATCATGGAGCCGCAAGCAAGTTGTTGCAGGGCATGAAGGATGTTGTAGCTGAGATTTTTGAGCTCCCTTTAGAAGAGAAGAATAAGATTATTGAGACGTACTCTAGTGAAGTTGAAAAAGTTGGAAAGGAGCTCCTGAGTTCTATAACGGGGATGAAGAAGGATGCTCTTCTTGGACTACATCAAGAGTTGGTACAAGCTTTCACAATCAACTATTATCCACCATGCTCTACGCCTGAGAAAGTGCTAGGTCTAACTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

89

Amino Acids

9.81

Weight (kDa)

5.3

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 2 - 44 5.5e-07 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029943)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0466121
rosa_samantha Rh3CG147700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AfaI GTAC 2 cut(s) 107, 201
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 4 cut(s) 56, 70, 139, 206
AluI AGCT 4 cut(s) 56, 70, 139, 206
Alw21I GWGCWC 2 cut(s) 72, 141
Alw26I GTCTC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 72, 141
Bbv12I GWGCWC 2 cut(s) 72, 141
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 111, 254
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BseGI GGATG 3 cut(s) 52, 165, 175
BseMII CTCAG 3 cut(s) 48, 134, 234
BsiHKAI GWGCWC 2 cut(s) 72, 141
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 72, 141
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 3 cut(s) 49, 135, 235
BspLI GGNNCC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 75, 180
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 57, 143, 243
BstF5I GGATG 3 cut(s) 52, 165, 175
BstMAI GTCTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 52, 165, 175
Cac8I GCNNGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 106, 200
CviAII CATG 3 cut(s) 11, 40, 231
CviJI RGCY 5 cut(s) 17, 56, 70, 139, 206
CviKI_1 RGCY 5 cut(s) 17, 56, 70, 139, 206
CviQI GTAC 2 cut(s) 106, 200
DdeI CTNAG 3 cut(s) 57, 143, 243
Eam1104I CTCTTC 2 cut(s) 75, 180
EarI CTCTTC 2 cut(s) 75, 180
Ecl136II GAGCTC 2 cut(s) 70, 139
Eco24I GRGCYC 2 cut(s) 72, 141
Eco53kI GAGCTC 2 cut(s) 70, 139
EcoICRI GAGCTC 2 cut(s) 70, 139
EcoT38I GRGCYC 2 cut(s) 72, 141
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 14, 43, 234
FaiI YATR 4 cut(s) 12, 41, 152, 232
FatI CATG 3 cut(s) 10, 39, 230
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 3 cut(s) 59, 172, 182
FriOI GRGCYC 2 cut(s) 72, 141
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 111, 254
GluI GCNGC 1 cut(s) 18
Hin1II CATG 3 cut(s) 14, 43, 234
HindIII AAGCTT 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 142, 191
HpyAV CCTTC 2 cut(s) 37, 160
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 57, 143, 243
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 14, 43, 234
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 4 cut(s) 14, 75, 136, 144
LpnPI CCDG 3 cut(s) 20, 155, 255
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 111, 254
MaeII ACGT 1 cut(s) 104
MboII GAAGA 4 cut(s) 92, 97, 167, 175
MhlI GDGCHC 2 cut(s) 72, 141
MmeI TCCRAC 1 cut(s) 109
NlaIII CATG 3 cut(s) 14, 43, 234
NlaIV GGNNCC 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 19
Psp124BI GAGCTC 2 cut(s) 72, 141
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 2 cut(s) 107, 201
RsaNI GTAC 2 cut(s) 106, 200
SacI GAGCTC 2 cut(s) 72, 141
SapI GCTCTTC 1 cut(s) 180
SatI GCNGC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 72, 141
SetI ASST 6 cut(s) 58, 72, 107, 141, 208, 259
SfaNI GCATC 1 cut(s) 160
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 111, 254
SstI GAGCTC 2 cut(s) 72, 141
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 107
TauI GCSGC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 56, 176
XspI CTAG 2 cut(s) 111, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.