Rh3DG043700

serine threonine-protein kinase HT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0034110
Physical Location & Seq
Forward (+)
2862582 .. 2876143
13562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG043700.1

Sequence Viewer

Length: 447 bp
ATGGCCCCCGAAATGATTAAGCGTAAATCCTATGGGCGAAAGGTCGATGTCTACAGTTTTGGACTCATTTTGTGGGAACTAGTAGCCGGAACAATCCCTTATGAGGAGATGAATCCCATCCAAGTTGCTTTTGCAGTTGTGAATAAGAATTTGAGGCCACTTATCCCAAAGGACTGCCCAAGAGCTATGCGAGCCTTGATCGAGCAATGCTCGTTGTTGCAGCCGGATAAAAGGCCCGAGTTTTGGCAGGTTGTAAAGGTGTTAGAACAATTTGAGTCTTCCCTTGCTCGAGATGGAACATTGACGCTTGTACAGAATTTGACTTGCCAAGATCATAAAAAGGGGATGCTTCACTGGATTCAAAAGCTTGGTCAGCATCCAAATAGTTCACCCATGCCTAAATCCAAGTTTTTCAAACAAATAAGACTGATATGGATCAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

17.2

Weight (kDa)

9.68

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 88 3.1e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 1 - 86 2.4e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034110)

Species Orthologous Gene IDs
rosa_samantha Rh3CG042900 Rh3DG043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 51
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 148, 316
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 103, 243
AgsI TTSAA 2 cut(s) 362, 415
AhlI ACTAGT 1 cut(s) 79
AluBI AGCT 2 cut(s) 185, 367
AluI AGCT 2 cut(s) 185, 367
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 236, 288
AoxI GGCC 3 cut(s) 3, 155, 233
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 148, 316
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspS9I GGNCC 2 cut(s) 4, 234
AsuHPI GGTGA 1 cut(s) 381
AvaI CYCGRG 2 cut(s) 236, 288
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 125, 287
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 80, 445
BfmI CTRYAG 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmeT110I CYCGRG 2 cut(s) 236, 288
BmgT120I GGNCC 2 cut(s) 4, 234
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 336, 385
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaBI GATNNNNATC 2 cut(s) 434, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 243
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 212
Bse8I GATNNNNATC 2 cut(s) 434, 440
BseGI GGATG 3 cut(s) 117, 351, 376
BseJI GATNNNNATC 2 cut(s) 434, 440
BseLI CCNNNNNNNGG 2 cut(s) 103, 243
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 3 cut(s) 5, 157, 235
BsiHKCI CYCGRG 2 cut(s) 236, 288
BsiSI CCGG 2 cut(s) 87, 224
BslI CCNNNNNNNGG 2 cut(s) 103, 243
BsnI GGCC 3 cut(s) 5, 157, 235
BsoBI CYCGRG 2 cut(s) 236, 288
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 3 cut(s) 198, 331, 435
BspANI GGCC 3 cut(s) 5, 157, 235
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 359
BssMI GATC 3 cut(s) 198, 331, 435
Bst4CI ACNGT 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 192
BstF5I GGATG 3 cut(s) 117, 351, 376
BstKTI GATC 3 cut(s) 201, 334, 438
BstMBI GATC 3 cut(s) 198, 331, 435
BstMWI GCNNNNNNNGC 2 cut(s) 191, 373
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 3 cut(s) 5, 157, 235
BtsCI GGATG 3 cut(s) 117, 351, 376
BtsIMutI CAGTG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 4, 234
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 394
CviJI RGCY 8 cut(s) 5, 86, 157, 185, 194, 223, 235, 367
CviKI_1 RGCY 8 cut(s) 5, 86, 157, 185, 194, 223, 235, 367
CviQI GTAC 1 cut(s) 311
DpnI GATC 3 cut(s) 200, 333, 437
DpnII GATC 3 cut(s) 198, 331, 435
Eco88I CYCGRG 2 cut(s) 236, 288
FaeI CATG 1 cut(s) 397
FaiI YATR 6 cut(s) 33, 102, 188, 336, 395, 433
FatI CATG 1 cut(s) 393
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 3 cut(s) 104, 358, 363
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 2 cut(s) 80, 445
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 3 cut(s) 5, 157, 235
HapII CCGG 2 cut(s) 87, 224
HgaI GACGC 1 cut(s) 313
Hin1II CATG 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 63, 112, 275, 358
HpaII CCGG 2 cut(s) 87, 224
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 52, 389
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 2 cut(s) 52, 389
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 134, 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 373
Hsp92II CATG 1 cut(s) 397
Kzo9I GATC 3 cut(s) 198, 331, 435
LpnPI CCDG 4 cut(s) 100, 233, 237, 340
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 2 cut(s) 336, 385
MaeI CTAG 2 cut(s) 80, 445
MalI GATC 3 cut(s) 200, 333, 437
MboI GATC 3 cut(s) 198, 331, 435
MboII GAAGA 1 cut(s) 270
MluCI AATT 3 cut(s) 148, 269, 316
MlyI GAGTC 2 cut(s) 57, 284
MnlI CCTC 2 cut(s) 97, 147
MseI TTAA 1 cut(s) 18
MspI CCGG 2 cut(s) 87, 224
MwoI GCNNNNNNNGC 2 cut(s) 191, 373
NdeII GATC 3 cut(s) 198, 331, 435
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 112, 358
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 2 cut(s) 57, 283
PpsI GAGTC 2 cut(s) 57, 283
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 234
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 3 cut(s) 198, 331, 435
Sau96I GGNCC 2 cut(s) 4, 234
SchI GAGTC 2 cut(s) 57, 284
SetI ASST 5 cut(s) 45, 187, 252, 261, 369
SfaNI GCATC 2 cut(s) 336, 385
SfcI CTRYAG 1 cut(s) 52
Sfr274I CTCGAG 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 3 cut(s) 148, 269, 316
SspMI CTAG 2 cut(s) 80, 445
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 3 cut(s) 45, 201, 289
TasI AATT 3 cut(s) 148, 269, 316
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 112, 358
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 359
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 359
XapI RAATTY 2 cut(s) 148, 316
XhoI CTCGAG 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 2 cut(s) 80, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.