Rh3DG230400

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0029421
Physical Location & Seq
Forward (+)
21890150 .. 21891874
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG230400.1

Sequence Viewer

Length: 555 bp
ATGGTGGATCCGGCGAACACGCCACTTGGCAAAATGCTATTGGAGGAGATCACTCCGGTCGTCATGGTGCTCCGCACGCCTCTCGTCGAAGAAGCTTGCCAGAAGAACGGCCTCACCTTCGTCCAAATGCTCAGGCCCTTCTGCGTCTTCAACAACTTCGACGTGCCTGTGCGGACGGCGAGTGATCAACCTTACAGGCTTCAGAAGTTCAGATTACGCTTGTTTTATGACTCCGATGTTCGGCAACCGAATTTGGAGGTATCAAAAGAACGGCTGAAACAAGTCATAACCCAGGCTGGGGAGAAAGATCTTTCGGAGTTGTGCTCGGAACTGCCTCAAATTAATAATGCACCATCCAGACCAGAATCTGAAGCTCTACCATCATGGTTTCAGTTTTTCAACAAAGAGCTTGTACATACAGTCTCTTTTTCTGACCACGAAGCTTTTGATCATCCTTTGGCATGTAAGGTCTTATTGTGGTTTCTTCAAAAGATGATCAGCCCATCAACAGATTTCTCAACCTCTTTAACTCGAACAAGTTGCCGTCCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPPC-Trs85 TRAPPC9-Trs120

Protein Analysis

184

Amino Acids

21.14

Weight (kDa)

5.94

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC-Trs85 PF12739 16 - 156 5.4e-20 ER-Golgi trafficking TRAPP I complex 85 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029421)

Species Orthologous Gene IDs
pyrus_communis pycom12g03610
rosa_samantha Rh3DG230400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 73, 172
AclWI GGATC 2 cut(s) 2, 15
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 2 cut(s) 185, 390
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 240, 297, 298
AgsI TTSAA 3 cut(s) 151, 400, 488
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 95, 374, 409, 443
AluI AGCT 4 cut(s) 95, 374, 409, 443
Alw21I GWGCWC 2 cut(s) 72, 326
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 2 cut(s) 2, 15
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 109, 134
ApoI RAATTY 1 cut(s) 250
AseI ATTAAT 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 106
BamHI GGATCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 72, 326
BccI CCATC 3 cut(s) 361, 388, 511
BceAI ACGGC 4 cut(s) 124, 192, 287, 528
BcgI CGANNNNNNTGC 3 cut(s) 64, 98, 522
BciT130I CCWGG 1 cut(s) 293
BclI TGATCA 3 cut(s) 184, 448, 495
BcoDI GTCTC 1 cut(s) 427
BglII AGATCT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 308, 340
Bpu10I CCTNAGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 297, 298
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 353, 451
BseLI CCNNNNNNNGG 3 cut(s) 240, 297, 298
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 111, 136
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 72, 326
BsiSI CCGG 2 cut(s) 11, 56
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 240, 297, 298
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 2 cut(s) 111, 136
Bsp1286I GDGCHC 2 cut(s) 72, 326
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 6 cut(s) 7, 48, 184, 307, 448, 495
BspACI CCGC 2 cut(s) 73, 172
BspANI GGCC 2 cut(s) 111, 136
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 2, 15
BsrGI TGTACA 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 6 cut(s) 7, 48, 184, 307, 448, 495
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 421
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 77, 97
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 353, 451
BstKTI GATC 6 cut(s) 10, 51, 187, 310, 451, 498
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 6 cut(s) 7, 48, 184, 307, 448, 495
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 76, 549
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 7, 307
BstYI RGATCY 2 cut(s) 7, 307
BsuRI GGCC 2 cut(s) 111, 136
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 353, 451
Cac8I GCNNGC 2 cut(s) 77, 97
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 413
CviAII CATG 3 cut(s) 64, 384, 462
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 1 cut(s) 131
DpnI GATC 6 cut(s) 9, 50, 186, 309, 450, 497
DpnII GATC 6 cut(s) 7, 48, 184, 307, 448, 495
Eco57I CTGAAG 2 cut(s) 185, 390
EcoO109I RGGNCCY 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 67, 387, 465
FaiI YATR 6 cut(s) 65, 228, 287, 385, 417, 463
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 63, 383, 461
FbaI TGATCA 3 cut(s) 184, 448, 495
FokI GGATG 2 cut(s) 340, 438
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 2 cut(s) 111, 136
HapII CCGG 2 cut(s) 11, 56
HgaI GACGC 1 cut(s) 133
Hin1II CATG 3 cut(s) 67, 387, 465
HindIII AAGCTT 2 cut(s) 93, 441
HinfI GANTC 2 cut(s) 230, 365
HpaII CCGG 2 cut(s) 11, 56
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 7 cut(s) 204, 212, 235, 316, 328, 370, 433
Hpy188III TCNNGA 1 cut(s) 357
Hpy99I CGWCG 2 cut(s) 89, 164
HpyAV CCTTC 2 cut(s) 127, 148
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 549
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 67, 387, 465
Ksp22I TGATCA 3 cut(s) 184, 448, 495
Kzo9I GATC 6 cut(s) 7, 48, 184, 307, 448, 495
LmnI GCTCC 1 cut(s) 75
MaeII ACGT 1 cut(s) 162
MalI GATC 6 cut(s) 9, 50, 186, 309, 450, 497
MboI GATC 6 cut(s) 7, 48, 184, 307, 448, 495
MboII GAAGA 4 cut(s) 101, 115, 139, 476
MflI RGATCY 2 cut(s) 7, 307
MhlI GDGCHC 2 cut(s) 72, 326
MluCI AATT 2 cut(s) 250, 339
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 6 cut(s) 37, 90, 122, 250, 345, 532
MseI TTAA 2 cut(s) 342, 527
MspI CCGG 2 cut(s) 11, 56
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 76, 549
NdeII GATC 6 cut(s) 7, 48, 184, 307, 448, 495
NlaIII CATG 3 cut(s) 67, 387, 465
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 465
PfeI GAWTC 1 cut(s) 365
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 7, 307
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 342, 527
Sau3AI GATC 6 cut(s) 7, 48, 184, 307, 448, 495
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 72, 326
Sse9I AATT 2 cut(s) 250, 339
SsiI CCGC 2 cut(s) 73, 172
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 87, 159, 532
TasI AATT 2 cut(s) 250, 339
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 2 cut(s) 342, 527
Tru9I TTAA 2 cut(s) 342, 527
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.