Rh4AG018800

Perakine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0021388
Physical Location & Seq
Reverse (-)
3564964 .. 3565900
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG018800.1

Sequence Viewer

Length: 345 bp
ATGGAGGACAGATCTGATATTGAAACCCCAAAGGTTAAACTGGGCAGTCAAGGCTTGGAGGTGTCTAGATTGGGTTTTGGATGTGGGGGACTATCTGGAATATACAATGCTCCTCTCTCTCACGAAGCTGGATGTTCAGTGATACAGGAAGCATTCAATAGGGGCATCACCTTCTATGATACTTCAGATGCTTATGGTCAGGATCATGATAATGAAATCATGGTCGGCAAGGCTTTAAAACAACTTACTCGAGAAAAGGTTCAATTGGCTACAAAATTTGGCATTCTCAAGTCAGACAGCTTTGAATTCAGTGTAAATGGGACCCCGGAGTATGTAAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

5.1

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 98 7.7e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021388)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387831 RchiOBHm_Chr6g0286121
rosa_roxburghii Rroxscaffold_1G00024790
rosa_samantha Rh4AG018800 Rh6CG294600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 275, 305
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 23, 157, 263, 305
AluBI AGCT 2 cut(s) 128, 300
AluI AGCT 2 cut(s) 128, 300
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 249
ApoI RAATTY 2 cut(s) 275, 305
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 322, 323
BmrFI CCNGG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 174, 178
BmuI ACTGGG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 86, 137
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 102, 334
BsmFI GGGAC 2 cut(s) 102, 334
BsmI GAATGC 2 cut(s) 152, 282
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 2 cut(s) 11, 202
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 322, 323
BspPI GGATC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 11, 202
BstF5I GGATG 2 cut(s) 86, 137
BstKTI GATC 2 cut(s) 14, 205
BstMBI GATC 2 cut(s) 11, 202
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsCI GGATG 2 cut(s) 86, 137
BtsIMutI CAGTG 2 cut(s) 144, 316
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 321
CviAII CATG 3 cut(s) 206, 220, 342
CviJI RGCY 5 cut(s) 54, 128, 233, 269, 300
CviKI_1 RGCY 5 cut(s) 54, 128, 233, 269, 300
DpnI GATC 2 cut(s) 13, 204
DpnII GATC 2 cut(s) 11, 202
DraI TTTAAA 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 305
FaeI CATG 3 cut(s) 209, 223, 345
FaiI YATR 7 cut(s) 103, 177, 195, 207, 221, 333, 343
FaqI GGGAC 2 cut(s) 102, 334
FatI CATG 3 cut(s) 205, 219, 341
FokI GGATG 2 cut(s) 93, 144
FspBI CTAG 1 cut(s) 66
HapII CCGG 1 cut(s) 326
Hin1II CATG 3 cut(s) 209, 223, 345
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 16, 187, 295
Hpy188III TCNNGA 6 cut(s) 66, 96, 122, 200, 206, 251
HpyAV CCTTC 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 209, 223, 345
KflI GGGWCCC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 11, 202
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 26, 81, 114, 131, 185, 339
LweI GCATC 2 cut(s) 174, 178
MaeI CTAG 1 cut(s) 66
MalI GATC 2 cut(s) 13, 204
MboI GATC 2 cut(s) 11, 202
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 11
MluCI AATT 3 cut(s) 263, 275, 305
MnlI CCTC 2 cut(s) 52, 123
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 36, 236
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 2 cut(s) 152, 282
MwoI GCNNNNNNNGC 1 cut(s) 51
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 11, 202
NlaIII CATG 3 cut(s) 209, 223, 345
NlaIV GGNNCC 2 cut(s) 322, 323
PaeR7I CTCGAG 1 cut(s) 249
PagI TCATGA 1 cut(s) 205
PctI GAATGC 2 cut(s) 152, 282
PdmI GAANNNNTTC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 322, 323
PspPI GGNCC 1 cut(s) 321
PspPPI RGGWCCY 1 cut(s) 321
PsuI RGATCY 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 36, 236
Sau3AI GATC 2 cut(s) 11, 202
Sau96I GGNCC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 326
SetI ASST 6 cut(s) 36, 63, 130, 173, 261, 302
SfaNI GCATC 2 cut(s) 174, 178
Sfr274I CTCGAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 321
SlaI CTCGAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 249, 287
SmoI CTYRAG 2 cut(s) 249, 287
Sse9I AATT 3 cut(s) 263, 275, 305
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 324
TaqI TCGA 1 cut(s) 250
TasI AATT 3 cut(s) 263, 275, 305
Tru1I TTAA 2 cut(s) 36, 236
Tru9I TTAA 2 cut(s) 36, 236
TscAI CASTG 2 cut(s) 144, 316
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 2 cut(s) 144, 316
VpaK11BI GGWCC 1 cut(s) 321
XapI RAATTY 2 cut(s) 275, 305
XbaI TCTAGA 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.