Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0025140

Physical Location & Seq

Genomic Coordinates Reverse (-)

7664941 .. 7666043

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTCCTGAGAGATGCGTTTGTTATTGATTCTGCTACGGATGACAGAAACCTTGTTCTAAGCTATTGTCCTTGTCAGTTCCCTACACTTGGCTTTATTGTGGAACGGTATTGGGAGATACAGTCACATGAGCCCGAGGAATTTTGGACCATTAACTGTTCACATAGATCAGATGAACGAATTGCGACATTCAGTTGGATGCGTGGCCATTTTTTTTATCATGCTTATGCTATCATAATCTATGAGATGTGCATTGAGAAGCCTACTGCAACTGTCACAAAGGTCAGACAACAGGAGAAGCTGAAGTATCCTCCATATCCTTTGAATACCATTGAGCTTGAAAAGCGTGCGTCAAGATACTTTCGAATGAGTTCTGAACATACTATGAAGGTAGCAGAAGAGCTTTACCAATCTGGTTTCATCAGTTATCCTCGCACAGAGACCGATGGCTTCTCTCCAAATACTGATTTGCATGTTAGTAATTTCTTCTTTATAAACTTTTTTTTGGCACACATAAGCATACTTTTCAATTTTTATTGCCTTTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

183

Amino Acids

21.79

Weight (kDa)

5.79

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_bac	PF01131	17 - 156	3.6e-39	DNA topoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0025140)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229331
rosa_samantha	Rh4AG035600 Rh6BG187500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	325, 341, 529
AluBI	AGCT	4 cut(s)	63, 301, 337, 403
AluI	AGCT	4 cut(s)	63, 301, 337, 403
Alw26I	GTCTC	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	147
AsuII	TTCGAA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	135
BccI	CCATC	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	147
BmsI	GCATC	2 cut(s)	4, 189
Bpu14I	TTCGAA	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	46, 204
BseLI	CCNNNNNNNGG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	167
Bst4CI	ACNGT	4 cut(s)	108, 123, 158, 274
Bst6I	CTCTTC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	8, 59
BstF5I	GGATG	2 cut(s)	46, 204
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	46, 204
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	339
CviAII	CATG	3 cut(s)	128, 221, 473
CviJI	RGCY	9 cut(s)	63, 93, 133, 207, 262, 301, 337, 403, 450
CviKI_1	RGCY	9 cut(s)	63, 93, 133, 207, 262, 301, 337, 403, 450
DdeI	CTNAG	2 cut(s)	8, 59
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	3 cut(s)	131, 224, 476
FatI	CATG	3 cut(s)	127, 220, 472
FokI	GGATG	2 cut(s)	53, 211
FriOI	GRGCYC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	131, 224, 476
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	172, 287, 376
Hpy188III	TCNNGA	3 cut(s)	7, 354, 549
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	4 cut(s)	108, 123, 158, 274
HpyCH4V	TGCA	3 cut(s)	252, 269, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	8, 59
Hsp92II	CATG	3 cut(s)	131, 224, 476
Kzo9I	GATC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	20, 278, 399
LweI	GCATC	2 cut(s)	4, 189
MaeIII	GTNAC	2 cut(s)	123, 274
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	410, 478
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	140, 180, 481, 529
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	3 cut(s)	130, 321, 441
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	131, 224, 476
NmuCI	GTSAC	2 cut(s)	123, 274
NspI	RCATGY	1 cut(s)	476
NspV	TTCGAA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	54, 65, 285, 303, 339, 393, 405
SfaNI	GCATC	2 cut(s)	4, 189
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	140, 180, 481, 529
TaaI	ACNGT	4 cut(s)	108, 123, 158, 274
TaqI	TCGA	1 cut(s)	364
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	4 cut(s)	140, 180, 481, 529
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	123, 274
Tsp45I	GTSAC	2 cut(s)	123, 274
TspDTI	ATGAA	3 cut(s)	189, 401, 409
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.